TnSeqCorr

Top 10 genes with highest correlation to Rv0840c/pip:

update plotcorrelationlink to info on gene
Rv2681/- (cc=0.671) info on Rv2681/-
Rv2559c/- (cc=0.6076) info on Rv2559c/-
Rv1180/pks3 (cc=0.6006) info on Rv1180/pks3
Rv1453/- (cc=0.5967) info on Rv1453/-
Rv1986/- (cc=0.5942) info on Rv1986/-
Rv1815/- (cc=0.593) info on Rv1815/-
Rv3354/- (cc=0.5913) info on Rv3354/-
Rv1140/- (cc=0.5912) info on Rv1140/-
Rv1070c/echA8 (cc=0.5897) info on Rv1070c/echA8
Rv1708/- (cc=0.5811) info on Rv1708/-

Correlation of Rv0840c/pip with Rv1180/pks3

Normalized LFCs for Rv0840c/pip:
(description and provenance of datasets)
Rv0840c/pipRv1180/pks3
Fe_supp_jason_reseq

0.188

-0.279

low_pH_jason_reseq

-0.179

2.652

NO_jason_reseq

-0.11

0.0

B6_jason_reseq

0.235

2.843

MHCII_jason_reseq

1.249

3.318

Isoniazid02

1.206

-0.345

Rifampicin4

-0.014

-0.374

Ethambutol3

1.4

0.176

Meropenem3

0.355

-0.865

Vancomycin16

-0.305

0.225

Rv2680_day32

0.455

-0.493

H37Rv_KO_MarP

0.567

0.415

hypoxia_3wks

-0.311

-0.319

hypoxia_6wks

-0.163

0.234

glycerol

-0.829

-0.016

cholesterol

-0.447

0.163

AJ

-0.363

0.356

Bibs02

0.172

-0.254

Bibs02c

0.8

0.646

BL6

-0.557

-2.892

BL6a

0.017

-0.405

BXD01

-0.899

-2.644

BXD010

-0.973

-1.603

BXD011

-0.923

-2.421

BXD03

-0.402

-1.964

BXD04

-0.779

-1.702

BXD05

-1.08

-1.519

BXD06

-1.231

-2.271

BXD07

-1.201

-2.302

BXD08

-0.659

-2.404

BXD09

-0.39

-2.206

CAST

-0.095

0.307

CCcont

-0.209

-2.242

DS01

0.72

0.371

DS02

0.194

0.298

DS04

0.921

0.292

DS0c

0.676

0.093

GP01

-0.938

-1.877

GP02

-0.244

-1.623

GP0c

-0.562

-3.264

NOD

0.254

-0.194

NZO

-0.444

0.069

PWK

-0.865

0.374

H37Rv_KO_CtpC

-1.366

-1.492

H37Rv_KO_CtpD

-0.08

-2.799

H37Rv_KO_Rv1272

-0.239

-2.581

H37Rv_KO_SugABC

-0.256

-1.747

H37Rv_KO_MbtN

0.202

-1.345

Trans05

-0.559

-1.761

macrophage_unactivated

-0.379

-3.27

IL1

-1.267

-2.174

Rapamycin

-0.638

-1.534

Tcell

-0.984

-3.454

GMCSF

-0.082

-2.609

IFNab

-0.846

-2.276

IFNg

-0.708

-3.175

IFNg_GMCSF1

-0.44

-1.518

Rv1432_day32

-0.501

0.411

Rv1565c_day32

0.951

0.692

secA2_input

-0.077

0.944

delta_Rv3594

-0.627

0.2

delta_Rv3717

-0.753

-1.016

delta_Rv3811

-0.706

-1.142

delta_Rv0954

-0.136

-1.262

PonA1

-0.274

0.077

EccD1_KO

1.089

1.457

EspI_KO

1.286

-0.106

PE35_KO

0.665

0.694

PPE68_KO

0.784

0.557

glycerol2

0.031

-0.684

lignocerate

-0.013

0.737

oleate

-0.04

-0.489

phosphatidylcholine

0.113

-0.066

acetate

-0.254

-0.299

glucAc

0.045

-0.016

Rv0950ko

0.431

1.227

Rv1096ko

0.22

0.826

Rv3684ko

-0.36

0.419

delta_otsA_trehalose

1.128

0.724