TnSeqCorr

Top 10 genes with highest correlation to Rv0774c/-:

update plotcorrelationlink to info on gene
Rv3365c/- (cc=0.5138) info on Rv3365c/-
Rv0354c/PPE7 (cc=0.4637) info on Rv0354c/PPE7
Rv0811c/- (cc=0.4382) info on Rv0811c/-
Rv0194/- (cc=0.4352) info on Rv0194/-
Rv2882c/frr (cc=0.4327) info on Rv2882c/frr
Rv0232/- (cc=0.4294) info on Rv0232/-
Rv0276/- (cc=0.4269) info on Rv0276/-
Rv0701/rplC (cc=0.4177) info on Rv0701/rplC
Rv0033/acpA (cc=0.4176) info on Rv0033/acpA
Rv0301/vapC2 (cc=0.4167) info on Rv0301/vapC2

Correlation of Rv0774c/- with Rv3365c/-

Normalized LFCs for Rv0774c/-:
(description and provenance of datasets)
Rv0774c/-Rv3365c/-
Fe_supp_jason_reseq

-0.415

-0.106

low_pH_jason_reseq

-0.621

-1.225

NO_jason_reseq

-0.129

-0.656

B6_jason_reseq

-0.731

0.089

MHCII_jason_reseq

-0.818

-0.529

Isoniazid02

-1.125

-1.793

Rifampicin4

0.902

-0.341

Ethambutol3

-0.918

-1.694

Meropenem3

-0.926

-0.516

Vancomycin16

0.273

-0.114

Rv2680_day32

1.947

0.184

H37Rv_KO_MarP

-0.291

-1.158

hypoxia_3wks

-0.311

-0.61

hypoxia_6wks

-0.04

-0.038

glycerol

-0.443

-0.647

cholesterol

0.378

-0.054

AJ

-1.0

0.0

Bibs02

0.101

-0.24

Bibs02c

0.252

0.203

BL6

0.576

0.24

BL6a

0.359

0.27

BXD01

0.054

0.326

BXD010

0.035

0.149

BXD011

-0.193

-0.009

BXD03

0.292

0.4

BXD04

0.44

0.184

BXD05

-0.368

0.183

BXD06

-0.118

0.256

BXD07

0.234

0.171

BXD08

0.16

0.181

BXD09

-0.19

0.209

CAST

1.261

-0.174

CCcont

-0.251

0.155

DS01

0.816

0.068

DS02

0.419

0.769

DS04

1.779

0.859

DS0c

-0.514

0.481

GP01

1.076

0.523

GP02

0.963

1.221

GP0c

0.501

0.135

NOD

-0.164

0.277

NZO

-0.087

-0.214

PWK

0.904

0.352

H37Rv_KO_CtpC

0.673

0.058

H37Rv_KO_CtpD

1.117

0.875

H37Rv_KO_Rv1272

-1.19

0.362

H37Rv_KO_SugABC

-1.408

0.654

H37Rv_KO_MbtN

0.043

0.401

Trans05

1.589

0.908

macrophage_unactivated

1.525

0.615

IL1

-0.632

0.418

Rapamycin

0.829

0.285

Tcell

0.189

0.055

GMCSF

-0.684

0.222

IFNab

0.913

1.267

IFNg

0.257

0.738

IFNg_GMCSF1

0.949

0.49

Rv1432_day32

0.404

0.471

Rv1565c_day32

-1.989

-0.649

secA2_input

1.212

-0.21

delta_Rv3594

-1.423

0.014

delta_Rv3717

-0.25

0.177

delta_Rv3811

-1.013

-0.217

delta_Rv0954

-0.174

-0.226

PonA1

-0.635

0.335

EccD1_KO

-1.145

-0.059

EspI_KO

-1.503

-0.402

PE35_KO

-1.727

-0.773

PPE68_KO

-1.619

-0.419

glycerol2

0.209

0.573

lignocerate

0.479

0.302

oleate

1.17

-0.132

phosphatidylcholine

0.336

-0.623

acetate

-0.444

1.385

glucAc

0.622

0.873

Rv0950ko

0.286

-0.072

Rv1096ko

2.117

1.179

Rv3684ko

2.492

1.009

delta_otsA_trehalose

0.139

0.304