Top 10 genes with highest correlation to Rv0578c/PE_PGRS7:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1091/PE_PGRS22 | (cc=0.7327) | info on Rv1091/PE_PGRS22 |
| Rv2232/ptkA | (cc=0.6987) | info on Rv2232/ptkA |
| Rv3367/PE_PGRS51 | (cc=0.6871) | info on Rv3367/PE_PGRS51 |
| Rv1004c/- | (cc=0.6537) | info on Rv1004c/- |
| Rv3509c/ilvX | (cc=0.6284) | info on Rv3509c/ilvX |
| Rv1735c/- | (cc=0.6213) | info on Rv1735c/- |
| Rv3380c/- | (cc=0.6109) | info on Rv3380c/- |
| Rv3355c/- | (cc=0.6079) | info on Rv3355c/- |
| Rv2741/PE_PGRS47 | (cc=0.6056) | info on Rv2741/PE_PGRS47 |
| Rv3344c/PE_PGRS49 | (cc=0.5962) | info on Rv3344c/PE_PGRS49 |
Correlation of Rv0578c/PE_PGRS7 with Rv3509c/ilvX
Normalized LFCs for Rv0578c/PE_PGRS7:
(description and provenance of datasets)
| Rv0578c/PE_PGRS7 | Rv3509c/ilvX | |
| Fe_supp_jason_reseq | -2.133 | -0.081 |
| low_pH_jason_reseq | -0.806 | -0.375 |
| NO_jason_reseq | -0.99 | -0.257 |
| B6_jason_reseq | -0.628 | 0.367 |
| MHCII_jason_reseq | -0.418 | 0.362 |
| Isoniazid02 | -0.735 | 1.147 |
| Rifampicin4 | 0.42 | 0.55 |
| Ethambutol3 | 1.592 | 0.899 |
| Meropenem3 | 0.944 | 0.328 |
| Vancomycin16 | -0.271 | 0.727 |
| Rv2680_day32 | 0.172 | -0.207 |
| H37Rv_KO_MarP | 0.574 | 0.302 |
| hypoxia_3wks | -0.231 | -0.104 |
| hypoxia_6wks | -0.808 | -0.355 |
| glycerol | 0.238 | 0.699 |
| cholesterol | 0.276 | 0.869 |
| AJ | 0.983 | 0.282 |
| Bibs02 | 0.588 | 0.34 |
| Bibs02c | 0.828 | 0.45 |
| BL6 | -1.265 | 0.502 |
| BL6a | -0.739 | 0.458 |
| BXD01 | -0.89 | 0.516 |
| BXD010 | -0.64 | 0.03 |
| BXD011 | -0.87 | 0.68 |
| BXD03 | -0.464 | 0.047 |
| BXD04 | -0.796 | 0.408 |
| BXD05 | -0.386 | -0.064 |
| BXD06 | -1.211 | 0.39 |
| BXD07 | -0.788 | 0.174 |
| BXD08 | 0.107 | -0.011 |
| BXD09 | -0.702 | 0.126 |
| CAST | 0.095 | 0.207 |
| CCcont | -1.146 | -0.281 |
| DS01 | -0.101 | 0.409 |
| DS02 | 0.175 | 0.28 |
| DS04 | 0.624 | 0.835 |
| DS0c | -0.14 | 0.594 |
| GP01 | -0.31 | -0.119 |
| GP02 | -0.054 | -0.02 |
| GP0c | -0.113 | -0.314 |
| NOD | -0.583 | 0.714 |
| NZO | 0.0 | -0.048 |
| PWK | 0.269 | 0.415 |
| H37Rv_KO_CtpC | -0.511 | -0.006 |
| H37Rv_KO_CtpD | 0.606 | 0.044 |
| H37Rv_KO_Rv1272 | 0.141 | 0.167 |
| H37Rv_KO_SugABC | -0.37 | 0.471 |
| H37Rv_KO_MbtN | -0.481 | 0.257 |
| Trans05 | -0.056 | 0.094 |
| macrophage_unactivated | -1.891 | -0.732 |
| IL1 | -2.186 | -0.602 |
| Rapamycin | -2.569 | -0.868 |
| Tcell | -2.098 | -0.459 |
| GMCSF | -1.251 | -0.428 |
| IFNab | -2.851 | -0.856 |
| IFNg | -2.376 | -0.877 |
| IFNg_GMCSF1 | -1.882 | 0.226 |
| Rv1432_day32 | 1.064 | 0.756 |
| Rv1565c_day32 | -0.182 | 0.175 |
| secA2_input | 0.814 | -0.189 |
| delta_Rv3594 | 0.142 | 0.783 |
| delta_Rv3717 | -0.232 | 0.039 |
| delta_Rv3811 | -0.375 | 0.651 |
| delta_Rv0954 | -0.544 | 0.915 |
| PonA1 | -0.091 | 0.743 |
| EccD1_KO | -0.237 | 0.072 |
| EspI_KO | -0.536 | -0.125 |
| PE35_KO | -0.607 | -0.064 |
| PPE68_KO | -0.602 | -0.384 |
| glycerol2 | -1.852 | -0.174 |
| lignocerate | -2.21 | -0.358 |
| oleate | -1.528 | -0.33 |
| phosphatidylcholine | -1.852 | -0.209 |
| acetate | -2.135 | -0.849 |
| glucAc | -1.532 | -0.171 |
| Rv0950ko | -0.133 | 0.612 |
| Rv1096ko | 0.718 | 0.953 |
| Rv3684ko | 0.534 | 0.4 |
| delta_otsA_trehalose | -0.341 | -0.209 |