Top 10 genes with highest correlation to Rv0578c/PE_PGRS7:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1091/PE_PGRS22 | (cc=0.7327) | info on Rv1091/PE_PGRS22 |
| Rv2232/ptkA | (cc=0.6987) | info on Rv2232/ptkA |
| Rv3367/PE_PGRS51 | (cc=0.6871) | info on Rv3367/PE_PGRS51 |
| Rv1004c/- | (cc=0.6537) | info on Rv1004c/- |
| Rv3509c/ilvX | (cc=0.6284) | info on Rv3509c/ilvX |
| Rv1735c/- | (cc=0.6213) | info on Rv1735c/- |
| Rv3380c/- | (cc=0.6109) | info on Rv3380c/- |
| Rv3355c/- | (cc=0.6079) | info on Rv3355c/- |
| Rv2741/PE_PGRS47 | (cc=0.6056) | info on Rv2741/PE_PGRS47 |
| Rv3344c/PE_PGRS49 | (cc=0.5962) | info on Rv3344c/PE_PGRS49 |
Correlation of Rv0578c/PE_PGRS7 with Rv3355c/-
Normalized LFCs for Rv0578c/PE_PGRS7:
(description and provenance of datasets)
| Rv0578c/PE_PGRS7 | Rv3355c/- | |
| Fe_supp_jason_reseq | -2.133 | -1.959 |
| low_pH_jason_reseq | -0.806 | 1.578 |
| NO_jason_reseq | -0.99 | 0.541 |
| B6_jason_reseq | -0.628 | -0.503 |
| MHCII_jason_reseq | -0.418 | 0.535 |
| Isoniazid02 | -0.735 | 0.374 |
| Rifampicin4 | 0.42 | -0.195 |
| Ethambutol3 | 1.592 | 0.578 |
| Meropenem3 | 0.944 | 0.161 |
| Vancomycin16 | -0.271 | -0.096 |
| Rv2680_day32 | 0.172 | 0.698 |
| H37Rv_KO_MarP | 0.574 | 0.385 |
| hypoxia_3wks | -0.231 | 2.512 |
| hypoxia_6wks | -0.808 | 0.585 |
| glycerol | 0.238 | 2.734 |
| cholesterol | 0.276 | 1.106 |
| AJ | 0.983 | 1.924 |
| Bibs02 | 0.588 | 0.823 |
| Bibs02c | 0.828 | -0.042 |
| BL6 | -1.265 | -1.387 |
| BL6a | -0.739 | -0.705 |
| BXD01 | -0.89 | -0.109 |
| BXD010 | -0.64 | -0.781 |
| BXD011 | -0.87 | -0.383 |
| BXD03 | -0.464 | -0.825 |
| BXD04 | -0.796 | -0.549 |
| BXD05 | -0.386 | -0.682 |
| BXD06 | -1.211 | -0.083 |
| BXD07 | -0.788 | -0.454 |
| BXD08 | 0.107 | -0.811 |
| BXD09 | -0.702 | -0.808 |
| CAST | 0.095 | -1.023 |
| CCcont | -1.146 | -1.342 |
| DS01 | -0.101 | -1.908 |
| DS02 | 0.175 | -2.173 |
| DS04 | 0.624 | -2.267 |
| DS0c | -0.14 | -2.534 |
| GP01 | -0.31 | -0.469 |
| GP02 | -0.054 | 0.167 |
| GP0c | -0.113 | 0.194 |
| NOD | -0.583 | -1.292 |
| NZO | 0.0 | 0.975 |
| PWK | 0.269 | 0.882 |
| H37Rv_KO_CtpC | -0.511 | -0.578 |
| H37Rv_KO_CtpD | 0.606 | 0.374 |
| H37Rv_KO_Rv1272 | 0.141 | 1.46 |
| H37Rv_KO_SugABC | -0.37 | 0.058 |
| H37Rv_KO_MbtN | -0.481 | 0.335 |
| Trans05 | -0.056 | 1.832 |
| macrophage_unactivated | -1.891 | -1.846 |
| IL1 | -2.186 | -3.841 |
| Rapamycin | -2.569 | -3.591 |
| Tcell | -2.098 | -3.812 |
| GMCSF | -1.251 | -1.993 |
| IFNab | -2.851 | -3.915 |
| IFNg | -2.376 | -1.783 |
| IFNg_GMCSF1 | -1.882 | -2.372 |
| Rv1432_day32 | 1.064 | 0.541 |
| Rv1565c_day32 | -0.182 | -1.339 |
| secA2_input | 0.814 | 1.5 |
| delta_Rv3594 | 0.142 | -0.922 |
| delta_Rv3717 | -0.232 | -1.888 |
| delta_Rv3811 | -0.375 | -1.707 |
| delta_Rv0954 | -0.544 | -1.587 |
| PonA1 | -0.091 | -0.758 |
| EccD1_KO | -0.237 | 0.201 |
| EspI_KO | -0.536 | 0.425 |
| PE35_KO | -0.607 | 1.52 |
| PPE68_KO | -0.602 | 1.069 |
| glycerol2 | -1.852 | -1.1 |
| lignocerate | -2.21 | -1.866 |
| oleate | -1.528 | -1.028 |
| phosphatidylcholine | -1.852 | -1.583 |
| acetate | -2.135 | -0.527 |
| glucAc | -1.532 | -0.423 |
| Rv0950ko | -0.133 | 0.582 |
| Rv1096ko | 0.718 | 1.553 |
| Rv3684ko | 0.534 | 0.134 |
| delta_otsA_trehalose | -0.341 | 0.126 |