Top 10 genes with highest correlation to Rv0549c/vapC3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1314c/- | (cc=0.4455) | info on Rv1314c/- |
| Rv3497c/mce4C | (cc=0.4166) | info on Rv3497c/mce4C |
| Rv2261c/- | (cc=0.4099) | info on Rv2261c/- |
| Rv3496c/mce4D | (cc=0.402) | info on Rv3496c/mce4D |
| Rv1492/mutA | (cc=0.399) | info on Rv1492/mutA |
| Rv2855/mtr | (cc=0.3922) | info on Rv2855/mtr |
| Rv1569/bioF1 | (cc=0.3871) | info on Rv1569/bioF1 |
| Rv3501c/yrbE4A | (cc=0.3816) | info on Rv3501c/yrbE4A |
| Rv1259/udgB | (cc=0.3792) | info on Rv1259/udgB |
| Rv3492c/- | (cc=0.3778) | info on Rv3492c/- |
Correlation of Rv0549c/vapC3 with Rv3492c/-
Normalized LFCs for Rv0549c/vapC3:
(description and provenance of datasets)
| Rv0549c/vapC3 | Rv3492c/- | |
| Fe_supp_jason_reseq | 2.234 | 1.28 |
| low_pH_jason_reseq | 0.201 | 0.02 |
| NO_jason_reseq | 0.226 | -0.336 |
| B6_jason_reseq | -0.805 | -2.485 |
| MHCII_jason_reseq | 1.217 | -2.817 |
| Isoniazid02 | 0.455 | 0.308 |
| Rifampicin4 | 0.677 | 0.333 |
| Ethambutol3 | 1.021 | 0.303 |
| Meropenem3 | 0.072 | 0.084 |
| Vancomycin16 | 0.597 | 0.846 |
| Rv2680_day32 | -0.305 | -1.861 |
| H37Rv_KO_MarP | 0.569 | -0.185 |
| hypoxia_3wks | 0.614 | -0.367 |
| hypoxia_6wks | -0.501 | 0.487 |
| glycerol | 0.162 | -1.802 |
| cholesterol | -0.631 | -3.5 |
| AJ | -1.788 | -2.64 |
| Bibs02 | -2.853 | -3.192 |
| Bibs02c | 1.585 | -0.227 |
| BL6 | 1.041 | -0.795 |
| BL6a | 1.012 | -1.078 |
| BXD01 | 0.276 | -2.075 |
| BXD010 | 0.318 | 0.986 |
| BXD011 | -0.415 | -0.738 |
| BXD03 | 0.594 | -0.834 |
| BXD04 | -0.098 | -0.589 |
| BXD05 | -0.915 | -0.243 |
| BXD06 | 0.619 | -1.068 |
| BXD07 | 0.587 | -1.857 |
| BXD08 | 1.437 | -2.119 |
| BXD09 | 0.77 | -1.187 |
| CAST | -1.138 | -2.766 |
| CCcont | 0.61 | 0.32 |
| DS01 | -0.948 | -2.479 |
| DS02 | -1.24 | -2.163 |
| DS04 | 0.299 | -1.779 |
| DS0c | -0.28 | -2.157 |
| GP01 | 0.433 | -1.219 |
| GP02 | 1.789 | -0.805 |
| GP0c | -0.091 | 0.2 |
| NOD | -1.31 | -1.897 |
| NZO | -2.159 | -2.91 |
| PWK | 0.158 | -1.209 |
| H37Rv_KO_CtpC | 0.304 | -0.801 |
| H37Rv_KO_CtpD | -2.21 | -0.04 |
| H37Rv_KO_Rv1272 | 0.432 | 0.438 |
| H37Rv_KO_SugABC | -0.254 | -1.292 |
| H37Rv_KO_MbtN | -1.051 | 1.725 |
| Trans05 | 1.153 | -0.113 |
| macrophage_unactivated | 0.366 | -2.415 |
| IL1 | 0.148 | 2.308 |
| Rapamycin | 0.525 | 1.114 |
| Tcell | 0.815 | -1.515 |
| GMCSF | 0.106 | -2.881 |
| IFNab | -0.45 | -2.165 |
| IFNg | -0.11 | -1.205 |
| IFNg_GMCSF1 | -1.854 | -1.769 |
| Rv1432_day32 | 0.804 | -2.847 |
| Rv1565c_day32 | -0.456 | -3.183 |
| secA2_input | 1.295 | 0.172 |
| delta_Rv3594 | 1.031 | -0.806 |
| delta_Rv3717 | 1.399 | -1.524 |
| delta_Rv3811 | -0.775 | -2.003 |
| delta_Rv0954 | 0.279 | -0.221 |
| PonA1 | 0.335 | -1.575 |
| EccD1_KO | 1.197 | 0.516 |
| EspI_KO | 0.667 | 0.625 |
| PE35_KO | 1.269 | 0.233 |
| PPE68_KO | 0.71 | 0.733 |
| glycerol2 | -0.121 | -0.09 |
| lignocerate | 0.651 | 0.608 |
| oleate | 0.569 | 0.77 |
| phosphatidylcholine | 0.377 | -0.283 |
| acetate | 0.725 | -0.725 |
| glucAc | 0.028 | 0.516 |
| Rv0950ko | -0.663 | 0.654 |
| Rv1096ko | 0.642 | 1.224 |
| Rv3684ko | 1.585 | -0.079 |
| delta_otsA_trehalose | 0.623 | -0.351 |