Top 10 genes with highest correlation to Rv0549c/vapC3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1314c/- | (cc=0.4455) | info on Rv1314c/- |
| Rv3497c/mce4C | (cc=0.4166) | info on Rv3497c/mce4C |
| Rv2261c/- | (cc=0.4099) | info on Rv2261c/- |
| Rv3496c/mce4D | (cc=0.402) | info on Rv3496c/mce4D |
| Rv1492/mutA | (cc=0.399) | info on Rv1492/mutA |
| Rv2855/mtr | (cc=0.3922) | info on Rv2855/mtr |
| Rv1569/bioF1 | (cc=0.3871) | info on Rv1569/bioF1 |
| Rv3501c/yrbE4A | (cc=0.3816) | info on Rv3501c/yrbE4A |
| Rv1259/udgB | (cc=0.3792) | info on Rv1259/udgB |
| Rv3492c/- | (cc=0.3778) | info on Rv3492c/- |
Correlation of Rv0549c/vapC3 with Rv1569/bioF1
Normalized LFCs for Rv0549c/vapC3:
(description and provenance of datasets)
| Rv0549c/vapC3 | Rv1569/bioF1 | |
| Fe_supp_jason_reseq | 2.234 | 1.1 |
| low_pH_jason_reseq | 0.201 | 1.042 |
| NO_jason_reseq | 0.226 | 0.612 |
| B6_jason_reseq | -0.805 | -3.205 |
| MHCII_jason_reseq | 1.217 | -2.159 |
| Isoniazid02 | 0.455 | 0.533 |
| Rifampicin4 | 0.677 | 0.56 |
| Ethambutol3 | 1.021 | 1.251 |
| Meropenem3 | 0.072 | 2.153 |
| Vancomycin16 | 0.597 | -0.287 |
| Rv2680_day32 | -0.305 | -4.081 |
| H37Rv_KO_MarP | 0.569 | -0.133 |
| hypoxia_3wks | 0.614 | -0.49 |
| hypoxia_6wks | -0.501 | -1.731 |
| glycerol | 0.162 | -4.463 |
| cholesterol | -0.631 | -3.71 |
| AJ | -1.788 | -5.943 |
| Bibs02 | -2.853 | -4.684 |
| Bibs02c | 1.585 | -5.359 |
| BL6 | 1.041 | -3.204 |
| BL6a | 1.012 | -4.531 |
| BXD01 | 0.276 | -3.336 |
| BXD010 | 0.318 | -3.281 |
| BXD011 | -0.415 | -2.815 |
| BXD03 | 0.594 | -3.464 |
| BXD04 | -0.098 | -3.168 |
| BXD05 | -0.915 | -2.877 |
| BXD06 | 0.619 | -3.419 |
| BXD07 | 0.587 | -3.547 |
| BXD08 | 1.437 | -2.079 |
| BXD09 | 0.77 | -3.6 |
| CAST | -1.138 | -3.792 |
| CCcont | 0.61 | 0.26 |
| DS01 | -0.948 | -6.0 |
| DS02 | -1.24 | -5.571 |
| DS04 | 0.299 | -3.195 |
| DS0c | -0.28 | -5.556 |
| GP01 | 0.433 | -1.923 |
| GP02 | 1.789 | -1.779 |
| GP0c | -0.091 | 1.55 |
| NOD | -1.31 | -4.013 |
| NZO | -2.159 | -5.109 |
| PWK | 0.158 | -4.651 |
| H37Rv_KO_CtpC | 0.304 | -3.363 |
| H37Rv_KO_CtpD | -2.21 | -1.93 |
| H37Rv_KO_Rv1272 | 0.432 | -3.612 |
| H37Rv_KO_SugABC | -0.254 | -1.509 |
| H37Rv_KO_MbtN | -1.051 | -0.692 |
| Trans05 | 1.153 | -3.217 |
| macrophage_unactivated | 0.366 | 2.108 |
| IL1 | 0.148 | -1.21 |
| Rapamycin | 0.525 | 0.35 |
| Tcell | 0.815 | 1.336 |
| GMCSF | 0.106 | 1.893 |
| IFNab | -0.45 | 2.095 |
| IFNg | -0.11 | -0.216 |
| IFNg_GMCSF1 | -1.854 | -2.614 |
| Rv1432_day32 | 0.804 | -1.304 |
| Rv1565c_day32 | -0.456 | -5.178 |
| secA2_input | 1.295 | 0.441 |
| delta_Rv3594 | 1.031 | 0.277 |
| delta_Rv3717 | 1.399 | 0.653 |
| delta_Rv3811 | -0.775 | -1.096 |
| delta_Rv0954 | 0.279 | 0.939 |
| PonA1 | 0.335 | 0.379 |
| EccD1_KO | 1.197 | 0.033 |
| EspI_KO | 0.667 | -1.492 |
| PE35_KO | 1.269 | -1.173 |
| PPE68_KO | 0.71 | -1.456 |
| glycerol2 | -0.121 | -0.68 |
| lignocerate | 0.651 | 0.537 |
| oleate | 0.569 | -0.688 |
| phosphatidylcholine | 0.377 | 0.27 |
| acetate | 0.725 | -0.369 |
| glucAc | 0.028 | -0.501 |
| Rv0950ko | -0.663 | -0.724 |
| Rv1096ko | 0.642 | 0.335 |
| Rv3684ko | 1.585 | -0.547 |
| delta_otsA_trehalose | 0.623 | 0.424 |