Top 10 genes with highest correlation to Rv0540/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1734c/- | (cc=0.6055) | info on Rv1734c/- |
| Rv0228/- | (cc=0.5973) | info on Rv0228/- |
| Rv2917/- | (cc=0.5972) | info on Rv2917/- |
| Rv0359/- | (cc=0.5969) | info on Rv0359/- |
| Rv1864c/- | (cc=0.5914) | info on Rv1864c/- |
| Rv2232/ptkA | (cc=0.5783) | info on Rv2232/ptkA |
| Rv0428c/- | (cc=0.5733) | info on Rv0428c/- |
| Rv1894c/- | (cc=0.5729) | info on Rv1894c/- |
| Rv2826c/- | (cc=0.5725) | info on Rv2826c/- |
| Rv1041c/- | (cc=0.5669) | info on Rv1041c/- |
Correlation of Rv0540/- with Rv2232/ptkA
Normalized LFCs for Rv0540/-:
(description and provenance of datasets)
| Rv0540/- | Rv2232/ptkA | |
| Fe_supp_jason_reseq | -0.074 | -1.782 |
| low_pH_jason_reseq | -1.096 | -0.626 |
| NO_jason_reseq | -0.312 | 0.108 |
| B6_jason_reseq | 0.833 | 0.489 |
| MHCII_jason_reseq | -0.506 | 1.444 |
| Isoniazid02 | 0.038 | 0.455 |
| Rifampicin4 | 0.07 | -0.439 |
| Ethambutol3 | 0.122 | 0.638 |
| Meropenem3 | 0.504 | 1.542 |
| Vancomycin16 | 2.406 | -0.43 |
| Rv2680_day32 | -0.833 | 0.947 |
| H37Rv_KO_MarP | -1.228 | 1.226 |
| hypoxia_3wks | 0.443 | 0.112 |
| hypoxia_6wks | -0.526 | -0.311 |
| glycerol | -0.278 | 1.271 |
| cholesterol | 0.973 | 0.0 |
| AJ | -0.424 | 0.156 |
| Bibs02 | 0.532 | 0.588 |
| Bibs02c | 1.634 | 1.441 |
| BL6 | -2.735 | -2.396 |
| BL6a | 0.796 | 0.209 |
| BXD01 | -1.446 | -0.608 |
| BXD010 | -2.013 | -1.641 |
| BXD011 | -0.05 | -0.741 |
| BXD03 | -2.821 | -2.017 |
| BXD04 | -2.096 | 0.131 |
| BXD05 | -0.796 | -0.462 |
| BXD06 | -1.093 | -0.335 |
| BXD07 | -1.76 | -0.448 |
| BXD08 | -1.75 | -0.357 |
| BXD09 | -1.849 | -1.346 |
| CAST | -0.606 | 0.517 |
| CCcont | -2.263 | -2.063 |
| DS01 | 0.866 | 0.71 |
| DS02 | -1.286 | 0.654 |
| DS04 | -0.937 | 0.583 |
| DS0c | 1.09 | 0.06 |
| GP01 | -1.97 | -0.164 |
| GP02 | -0.781 | 0.648 |
| GP0c | -0.893 | -0.421 |
| NOD | 0.719 | 0.604 |
| NZO | -0.558 | 0.309 |
| PWK | 0.239 | -0.492 |
| H37Rv_KO_CtpC | -1.285 | -0.466 |
| H37Rv_KO_CtpD | -2.232 | -1.686 |
| H37Rv_KO_Rv1272 | -0.194 | -0.257 |
| H37Rv_KO_SugABC | -0.4 | 0.529 |
| H37Rv_KO_MbtN | -0.379 | -1.024 |
| Trans05 | -0.2 | -2.026 |
| macrophage_unactivated | -2.743 | -3.592 |
| IL1 | -2.394 | -4.547 |
| Rapamycin | -2.667 | -3.67 |
| Tcell | -0.723 | -2.401 |
| GMCSF | -0.805 | -2.572 |
| IFNab | -3.459 | -2.098 |
| IFNg | -2.157 | -2.603 |
| IFNg_GMCSF1 | -1.678 | -2.181 |
| Rv1432_day32 | 0.0 | 1.119 |
| Rv1565c_day32 | -0.725 | -0.24 |
| secA2_input | -0.302 | 0.969 |
| delta_Rv3594 | -0.515 | -1.048 |
| delta_Rv3717 | -0.052 | -0.394 |
| delta_Rv3811 | -0.355 | -0.498 |
| delta_Rv0954 | -0.876 | -1.16 |
| PonA1 | -0.574 | 0.227 |
| EccD1_KO | -0.645 | -0.388 |
| EspI_KO | 0.288 | 1.8 |
| PE35_KO | -0.403 | -0.254 |
| PPE68_KO | -0.627 | 0.749 |
| glycerol2 | -0.263 | -1.354 |
| lignocerate | -0.8 | -1.695 |
| oleate | 0.343 | -0.315 |
| phosphatidylcholine | 0.049 | -1.217 |
| acetate | -0.79 | -1.445 |
| glucAc | -1.772 | -1.306 |
| Rv0950ko | 0.0 | 0.078 |
| Rv1096ko | 1.221 | -0.793 |
| Rv3684ko | 0.485 | 0.0 |
| delta_otsA_trehalose | -0.422 | 0.83 |