Top 10 genes with highest correlation to Rv0540/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1734c/- | (cc=0.6055) | info on Rv1734c/- |
| Rv0228/- | (cc=0.5973) | info on Rv0228/- |
| Rv2917/- | (cc=0.5972) | info on Rv2917/- |
| Rv0359/- | (cc=0.5969) | info on Rv0359/- |
| Rv1864c/- | (cc=0.5914) | info on Rv1864c/- |
| Rv2232/ptkA | (cc=0.5783) | info on Rv2232/ptkA |
| Rv0428c/- | (cc=0.5733) | info on Rv0428c/- |
| Rv1894c/- | (cc=0.5729) | info on Rv1894c/- |
| Rv2826c/- | (cc=0.5725) | info on Rv2826c/- |
| Rv1041c/- | (cc=0.5669) | info on Rv1041c/- |
Correlation of Rv0540/- with Rv0359/-
Normalized LFCs for Rv0540/-:
(description and provenance of datasets)
| Rv0540/- | Rv0359/- | |
| Fe_supp_jason_reseq | -0.074 | 0.095 |
| low_pH_jason_reseq | -1.096 | -1.012 |
| NO_jason_reseq | -0.312 | 0.837 |
| B6_jason_reseq | 0.833 | 0.692 |
| MHCII_jason_reseq | -0.506 | 1.3 |
| Isoniazid02 | 0.038 | 0.764 |
| Rifampicin4 | 0.07 | 0.097 |
| Ethambutol3 | 0.122 | 0.086 |
| Meropenem3 | 0.504 | 0.109 |
| Vancomycin16 | 2.406 | -0.17 |
| Rv2680_day32 | -0.833 | -0.023 |
| H37Rv_KO_MarP | -1.228 | 0.272 |
| hypoxia_3wks | 0.443 | -0.12 |
| hypoxia_6wks | -0.526 | -0.079 |
| glycerol | -0.278 | 0.453 |
| cholesterol | 0.973 | -0.176 |
| AJ | -0.424 | 0.363 |
| Bibs02 | 0.532 | 0.277 |
| Bibs02c | 1.634 | 0.053 |
| BL6 | -2.735 | -0.976 |
| BL6a | 0.796 | -0.726 |
| BXD01 | -1.446 | -0.705 |
| BXD010 | -2.013 | -0.867 |
| BXD011 | -0.05 | -0.706 |
| BXD03 | -2.821 | -1.073 |
| BXD04 | -2.096 | -1.555 |
| BXD05 | -0.796 | -1.302 |
| BXD06 | -1.093 | -1.334 |
| BXD07 | -1.76 | -1.084 |
| BXD08 | -1.75 | -1.029 |
| BXD09 | -1.849 | -1.134 |
| CAST | -0.606 | 0.657 |
| CCcont | -2.263 | -1.909 |
| DS01 | 0.866 | 0.53 |
| DS02 | -1.286 | 0.485 |
| DS04 | -0.937 | 0.111 |
| DS0c | 1.09 | 0.528 |
| GP01 | -1.97 | 0.353 |
| GP02 | -0.781 | 0.863 |
| GP0c | -0.893 | -0.377 |
| NOD | 0.719 | 0.135 |
| NZO | -0.558 | 0.097 |
| PWK | 0.239 | 0.115 |
| H37Rv_KO_CtpC | -1.285 | -1.181 |
| H37Rv_KO_CtpD | -2.232 | -0.874 |
| H37Rv_KO_Rv1272 | -0.194 | -1.584 |
| H37Rv_KO_SugABC | -0.4 | -0.397 |
| H37Rv_KO_MbtN | -0.379 | -0.62 |
| Trans05 | -0.2 | -0.053 |
| macrophage_unactivated | -2.743 | -2.093 |
| IL1 | -2.394 | -1.848 |
| Rapamycin | -2.667 | -1.393 |
| Tcell | -0.723 | -1.092 |
| GMCSF | -0.805 | -1.09 |
| IFNab | -3.459 | -2.053 |
| IFNg | -2.157 | -1.05 |
| IFNg_GMCSF1 | -1.678 | -0.594 |
| Rv1432_day32 | 0.0 | 0.786 |
| Rv1565c_day32 | -0.725 | -0.547 |
| secA2_input | -0.302 | 0.38 |
| delta_Rv3594 | -0.515 | -1.115 |
| delta_Rv3717 | -0.052 | 0.013 |
| delta_Rv3811 | -0.355 | -1.166 |
| delta_Rv0954 | -0.876 | -0.841 |
| PonA1 | -0.574 | -0.262 |
| EccD1_KO | -0.645 | 0.062 |
| EspI_KO | 0.288 | 0.054 |
| PE35_KO | -0.403 | -0.747 |
| PPE68_KO | -0.627 | -0.982 |
| glycerol2 | -0.263 | -0.053 |
| lignocerate | -0.8 | -0.349 |
| oleate | 0.343 | 0.023 |
| phosphatidylcholine | 0.049 | -0.038 |
| acetate | -0.79 | -0.72 |
| glucAc | -1.772 | -0.134 |
| Rv0950ko | 0.0 | 0.597 |
| Rv1096ko | 1.221 | 0.881 |
| Rv3684ko | 0.485 | 0.648 |
| delta_otsA_trehalose | -0.422 | -2.016 |