Top 10 genes with highest correlation to Rv0540/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1734c/- | (cc=0.6055) | info on Rv1734c/- |
| Rv0228/- | (cc=0.5973) | info on Rv0228/- |
| Rv2917/- | (cc=0.5972) | info on Rv2917/- |
| Rv0359/- | (cc=0.5969) | info on Rv0359/- |
| Rv1864c/- | (cc=0.5914) | info on Rv1864c/- |
| Rv2232/ptkA | (cc=0.5783) | info on Rv2232/ptkA |
| Rv0428c/- | (cc=0.5733) | info on Rv0428c/- |
| Rv1894c/- | (cc=0.5729) | info on Rv1894c/- |
| Rv2826c/- | (cc=0.5725) | info on Rv2826c/- |
| Rv1041c/- | (cc=0.5669) | info on Rv1041c/- |
Correlation of Rv0540/- with Rv0228/-
Normalized LFCs for Rv0540/-:
(description and provenance of datasets)
| Rv0540/- | Rv0228/- | |
| Fe_supp_jason_reseq | -0.074 | 1.07 |
| low_pH_jason_reseq | -1.096 | 0.0 |
| NO_jason_reseq | -0.312 | 0.0 |
| B6_jason_reseq | 0.833 | 1.759 |
| MHCII_jason_reseq | -0.506 | 0.37 |
| Isoniazid02 | 0.038 | -0.167 |
| Rifampicin4 | 0.07 | 0.558 |
| Ethambutol3 | 0.122 | -0.14 |
| Meropenem3 | 0.504 | 0.128 |
| Vancomycin16 | 2.406 | 0.796 |
| Rv2680_day32 | -0.833 | 0.0 |
| H37Rv_KO_MarP | -1.228 | -0.684 |
| hypoxia_3wks | 0.443 | 0.678 |
| hypoxia_6wks | -0.526 | -0.626 |
| glycerol | -0.278 | 0.585 |
| cholesterol | 0.973 | 0.915 |
| AJ | -0.424 | 0.05 |
| Bibs02 | 0.532 | 0.56 |
| Bibs02c | 1.634 | -1.66 |
| BL6 | -2.735 | -2.023 |
| BL6a | 0.796 | -2.66 |
| BXD01 | -1.446 | -2.107 |
| BXD010 | -2.013 | -2.072 |
| BXD011 | -0.05 | -2.06 |
| BXD03 | -2.821 | -2.187 |
| BXD04 | -2.096 | -2.0 |
| BXD05 | -0.796 | -2.177 |
| BXD06 | -1.093 | -2.159 |
| BXD07 | -1.76 | -2.24 |
| BXD08 | -1.75 | -2.151 |
| BXD09 | -1.849 | -2.273 |
| CAST | -0.606 | -0.389 |
| CCcont | -2.263 | -2.131 |
| DS01 | 0.866 | -0.727 |
| DS02 | -1.286 | -1.942 |
| DS04 | -0.937 | 0.779 |
| DS0c | 1.09 | -1.431 |
| GP01 | -1.97 | -1.597 |
| GP02 | -0.781 | -1.346 |
| GP0c | -0.893 | -2.103 |
| NOD | 0.719 | -0.83 |
| NZO | -0.558 | -0.285 |
| PWK | 0.239 | 0.168 |
| H37Rv_KO_CtpC | -1.285 | -2.628 |
| H37Rv_KO_CtpD | -2.232 | -1.922 |
| H37Rv_KO_Rv1272 | -0.194 | -2.281 |
| H37Rv_KO_SugABC | -0.4 | -1.503 |
| H37Rv_KO_MbtN | -0.379 | -1.667 |
| Trans05 | -0.2 | -1.983 |
| macrophage_unactivated | -2.743 | -2.923 |
| IL1 | -2.394 | -2.747 |
| Rapamycin | -2.667 | -2.842 |
| Tcell | -0.723 | -3.017 |
| GMCSF | -0.805 | -2.445 |
| IFNab | -3.459 | -2.799 |
| IFNg | -2.157 | -2.475 |
| IFNg_GMCSF1 | -1.678 | -1.386 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | -0.725 | 0.0 |
| secA2_input | -0.302 | 1.565 |
| delta_Rv3594 | -0.515 | 0.402 |
| delta_Rv3717 | -0.052 | 0.0 |
| delta_Rv3811 | -0.355 | 0.205 |
| delta_Rv0954 | -0.876 | 0.0 |
| PonA1 | -0.574 | 0.0 |
| EccD1_KO | -0.645 | -0.865 |
| EspI_KO | 0.288 | -0.359 |
| PE35_KO | -0.403 | -0.368 |
| PPE68_KO | -0.627 | -0.841 |
| glycerol2 | -0.263 | 0.0 |
| lignocerate | -0.8 | 0.591 |
| oleate | 0.343 | 0.0 |
| phosphatidylcholine | 0.049 | 0.193 |
| acetate | -0.79 | 0.0 |
| glucAc | -1.772 | 0.0 |
| Rv0950ko | 0.0 | 0.793 |
| Rv1096ko | 1.221 | 1.143 |
| Rv3684ko | 0.485 | 0.452 |
| delta_otsA_trehalose | -0.422 | 0.0 |