Top 10 genes with highest correlation to Rv0485/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1568/bioA | (cc=0.8733) | info on Rv1568/bioA |
| Rv1590/- | (cc=0.8659) | info on Rv1590/- |
| Rv3551/- | (cc=0.8531) | info on Rv3551/- |
| Rv3544c/fadE28 | (cc=0.8403) | info on Rv3544c/fadE28 |
| Rv3616c/espA | (cc=0.839) | info on Rv3616c/espA |
| Rv3870/eccCa1 | (cc=0.8312) | info on Rv3870/eccCa1 |
| Rv3502c/- | (cc=0.8275) | info on Rv3502c/- |
| Rv1589/bioB | (cc=0.8203) | info on Rv1589/bioB |
| Rv3882c/eccE1 | (cc=0.8097) | info on Rv3882c/eccE1 |
| Rv1405c/- | (cc=0.8093) | info on Rv1405c/- |
Correlation of Rv0485/- with Rv3870/eccCa1
Normalized LFCs for Rv0485/-:
(description and provenance of datasets)
| Rv0485/- | Rv3870/eccCa1 | |
| Fe_supp_jason_reseq | -0.56 | -1.088 |
| low_pH_jason_reseq | -1.026 | 0.325 |
| NO_jason_reseq | -2.242 | -0.291 |
| B6_jason_reseq | -4.618 | -2.875 |
| MHCII_jason_reseq | -3.592 | -3.014 |
| Isoniazid02 | -0.454 | -0.306 |
| Rifampicin4 | -0.393 | -0.888 |
| Ethambutol3 | 0.181 | -0.131 |
| Meropenem3 | -1.181 | 0.261 |
| Vancomycin16 | -0.557 | -0.215 |
| Rv2680_day32 | -3.166 | -1.924 |
| H37Rv_KO_MarP | 0.24 | 1.534 |
| hypoxia_3wks | 0.159 | -0.152 |
| hypoxia_6wks | -0.722 | 0.142 |
| glycerol | -0.413 | -0.78 |
| cholesterol | -3.975 | -0.197 |
| AJ | -4.686 | -5.284 |
| Bibs02 | -3.876 | -5.766 |
| Bibs02c | -3.778 | -4.15 |
| BL6 | -3.118 | -1.616 |
| BL6a | -4.417 | -4.402 |
| BXD01 | -3.065 | -3.251 |
| BXD010 | -3.013 | -2.846 |
| BXD011 | -2.635 | -2.901 |
| BXD03 | -3.015 | -2.571 |
| BXD04 | -2.757 | -2.748 |
| BXD05 | -2.718 | -2.789 |
| BXD06 | -3.542 | -3.586 |
| BXD07 | -3.674 | -2.661 |
| BXD08 | -3.219 | -3.816 |
| BXD09 | -3.306 | -3.836 |
| CAST | -4.443 | -4.883 |
| CCcont | -0.011 | -0.407 |
| DS01 | -5.006 | -4.356 |
| DS02 | -2.27 | -4.052 |
| DS04 | -4.112 | -2.155 |
| DS0c | -4.381 | -4.302 |
| GP01 | -0.576 | -2.367 |
| GP02 | -0.338 | -2.347 |
| GP0c | -0.379 | -0.842 |
| NOD | -2.302 | -1.925 |
| NZO | -4.028 | -5.444 |
| PWK | -2.842 | -5.533 |
| H37Rv_KO_CtpC | -3.064 | -1.66 |
| H37Rv_KO_CtpD | -1.944 | -1.651 |
| H37Rv_KO_Rv1272 | -2.297 | -1.806 |
| H37Rv_KO_SugABC | -1.715 | -0.647 |
| H37Rv_KO_MbtN | -0.775 | 0.049 |
| Trans05 | -3.074 | -1.38 |
| macrophage_unactivated | 0.189 | -0.262 |
| IL1 | 0.774 | -0.246 |
| Rapamycin | 1.056 | -0.288 |
| Tcell | -1.567 | -1.541 |
| GMCSF | -0.945 | 0.681 |
| IFNab | 0.441 | 1.859 |
| IFNg | -1.403 | -1.497 |
| IFNg_GMCSF1 | -1.697 | -1.313 |
| Rv1432_day32 | -4.519 | -2.52 |
| Rv1565c_day32 | -4.547 | -2.663 |
| secA2_input | 0.492 | 0.036 |
| delta_Rv3594 | 0.032 | 0.106 |
| delta_Rv3717 | -0.671 | -0.101 |
| delta_Rv3811 | -0.064 | -0.233 |
| delta_Rv0954 | 0.862 | 0.379 |
| PonA1 | 0.77 | 0.384 |
| EccD1_KO | 0.174 | 0.342 |
| EspI_KO | 0.297 | 0.633 |
| PE35_KO | 0.193 | 0.257 |
| PPE68_KO | 0.042 | 0.214 |
| glycerol2 | 1.275 | 0.423 |
| lignocerate | 0.315 | 0.792 |
| oleate | -0.065 | -0.193 |
| phosphatidylcholine | 0.77 | 0.531 |
| acetate | -0.043 | 0.095 |
| glucAc | -0.54 | 0.366 |
| Rv0950ko | 0.377 | 0.356 |
| Rv1096ko | 0.47 | -0.229 |
| Rv3684ko | 0.262 | 0.37 |
| delta_otsA_trehalose | -0.263 | -0.994 |