Top 10 genes with highest correlation to Rv0485/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1568/bioA | (cc=0.8733) | info on Rv1568/bioA |
| Rv1590/- | (cc=0.8659) | info on Rv1590/- |
| Rv3551/- | (cc=0.8531) | info on Rv3551/- |
| Rv3544c/fadE28 | (cc=0.8403) | info on Rv3544c/fadE28 |
| Rv3616c/espA | (cc=0.839) | info on Rv3616c/espA |
| Rv3870/eccCa1 | (cc=0.8312) | info on Rv3870/eccCa1 |
| Rv3502c/- | (cc=0.8275) | info on Rv3502c/- |
| Rv1589/bioB | (cc=0.8203) | info on Rv1589/bioB |
| Rv3882c/eccE1 | (cc=0.8097) | info on Rv3882c/eccE1 |
| Rv1405c/- | (cc=0.8093) | info on Rv1405c/- |
Correlation of Rv0485/- with Rv3616c/espA
Normalized LFCs for Rv0485/-:
(description and provenance of datasets)
| Rv0485/- | Rv3616c/espA | |
| Fe_supp_jason_reseq | -0.56 | 0.087 |
| low_pH_jason_reseq | -1.026 | -0.775 |
| NO_jason_reseq | -2.242 | -1.278 |
| B6_jason_reseq | -4.618 | -3.09 |
| MHCII_jason_reseq | -3.592 | -2.722 |
| Isoniazid02 | -0.454 | 0.476 |
| Rifampicin4 | -0.393 | 0.241 |
| Ethambutol3 | 0.181 | -0.018 |
| Meropenem3 | -1.181 | 0.789 |
| Vancomycin16 | -0.557 | -0.18 |
| Rv2680_day32 | -3.166 | -1.717 |
| H37Rv_KO_MarP | 0.24 | 0.381 |
| hypoxia_3wks | 0.159 | 0.024 |
| hypoxia_6wks | -0.722 | -0.098 |
| glycerol | -0.413 | -1.435 |
| cholesterol | -3.975 | -1.373 |
| AJ | -4.686 | -4.551 |
| Bibs02 | -3.876 | -4.346 |
| Bibs02c | -3.778 | -4.142 |
| BL6 | -3.118 | -3.453 |
| BL6a | -4.417 | -4.605 |
| BXD01 | -3.065 | -3.648 |
| BXD010 | -3.013 | -2.883 |
| BXD011 | -2.635 | -2.961 |
| BXD03 | -3.015 | -3.143 |
| BXD04 | -2.757 | -3.155 |
| BXD05 | -2.718 | -2.17 |
| BXD06 | -3.542 | -3.908 |
| BXD07 | -3.674 | -3.771 |
| BXD08 | -3.219 | -3.672 |
| BXD09 | -3.306 | -4.181 |
| CAST | -4.443 | -5.474 |
| CCcont | -0.011 | -1.136 |
| DS01 | -5.006 | -6.0 |
| DS02 | -2.27 | -5.764 |
| DS04 | -4.112 | -3.671 |
| DS0c | -4.381 | -5.466 |
| GP01 | -0.576 | -3.404 |
| GP02 | -0.338 | -2.752 |
| GP0c | -0.379 | -1.597 |
| NOD | -2.302 | -1.995 |
| NZO | -4.028 | -5.358 |
| PWK | -2.842 | -5.836 |
| H37Rv_KO_CtpC | -3.064 | -2.684 |
| H37Rv_KO_CtpD | -1.944 | -2.791 |
| H37Rv_KO_Rv1272 | -2.297 | -1.864 |
| H37Rv_KO_SugABC | -1.715 | -1.092 |
| H37Rv_KO_MbtN | -0.775 | 0.118 |
| Trans05 | -3.074 | -1.933 |
| macrophage_unactivated | 0.189 | -0.079 |
| IL1 | 0.774 | 1.35 |
| Rapamycin | 1.056 | -0.037 |
| Tcell | -1.567 | -0.841 |
| GMCSF | -0.945 | 2.094 |
| IFNab | 0.441 | 1.321 |
| IFNg | -1.403 | -1.109 |
| IFNg_GMCSF1 | -1.697 | -0.628 |
| Rv1432_day32 | -4.519 | -2.926 |
| Rv1565c_day32 | -4.547 | -3.852 |
| secA2_input | 0.492 | -0.211 |
| delta_Rv3594 | 0.032 | 0.101 |
| delta_Rv3717 | -0.671 | -0.448 |
| delta_Rv3811 | -0.064 | -0.094 |
| delta_Rv0954 | 0.862 | -1.009 |
| PonA1 | 0.77 | -1.103 |
| EccD1_KO | 0.174 | 0.135 |
| EspI_KO | 0.297 | 0.342 |
| PE35_KO | 0.193 | -0.502 |
| PPE68_KO | 0.042 | -0.618 |
| glycerol2 | 1.275 | 2.046 |
| lignocerate | 0.315 | 0.645 |
| oleate | -0.065 | 0.305 |
| phosphatidylcholine | 0.77 | 1.689 |
| acetate | -0.043 | -0.362 |
| glucAc | -0.54 | -0.715 |
| Rv0950ko | 0.377 | 0.326 |
| Rv1096ko | 0.47 | -0.199 |
| Rv3684ko | 0.262 | 0.174 |
| delta_otsA_trehalose | -0.263 | -0.88 |