Top 10 genes with highest correlation to Rv0485/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1568/bioA | (cc=0.8733) | info on Rv1568/bioA |
| Rv1590/- | (cc=0.8659) | info on Rv1590/- |
| Rv3551/- | (cc=0.8531) | info on Rv3551/- |
| Rv3544c/fadE28 | (cc=0.8403) | info on Rv3544c/fadE28 |
| Rv3616c/espA | (cc=0.839) | info on Rv3616c/espA |
| Rv3870/eccCa1 | (cc=0.8312) | info on Rv3870/eccCa1 |
| Rv3502c/- | (cc=0.8275) | info on Rv3502c/- |
| Rv1589/bioB | (cc=0.8203) | info on Rv1589/bioB |
| Rv3882c/eccE1 | (cc=0.8097) | info on Rv3882c/eccE1 |
| Rv1405c/- | (cc=0.8093) | info on Rv1405c/- |
Correlation of Rv0485/- with Rv1568/bioA
Normalized LFCs for Rv0485/-:
(description and provenance of datasets)
| Rv0485/- | Rv1568/bioA | |
| Fe_supp_jason_reseq | -0.56 | 0.395 |
| low_pH_jason_reseq | -1.026 | -0.239 |
| NO_jason_reseq | -2.242 | 0.239 |
| B6_jason_reseq | -4.618 | -4.106 |
| MHCII_jason_reseq | -3.592 | -3.512 |
| Isoniazid02 | -0.454 | 0.215 |
| Rifampicin4 | -0.393 | 0.401 |
| Ethambutol3 | 0.181 | -0.377 |
| Meropenem3 | -1.181 | -0.265 |
| Vancomycin16 | -0.557 | 0.127 |
| Rv2680_day32 | -3.166 | -3.765 |
| H37Rv_KO_MarP | 0.24 | -0.202 |
| hypoxia_3wks | 0.159 | 0.427 |
| hypoxia_6wks | -0.722 | 0.098 |
| glycerol | -0.413 | -6.0 |
| cholesterol | -3.975 | -4.527 |
| AJ | -4.686 | -6.0 |
| Bibs02 | -3.876 | -5.898 |
| Bibs02c | -3.778 | -6.0 |
| BL6 | -3.118 | -4.035 |
| BL6a | -4.417 | -6.0 |
| BXD01 | -3.065 | -4.071 |
| BXD010 | -3.013 | -4.003 |
| BXD011 | -2.635 | -3.121 |
| BXD03 | -3.015 | -3.185 |
| BXD04 | -2.757 | -3.754 |
| BXD05 | -2.718 | -3.771 |
| BXD06 | -3.542 | -4.306 |
| BXD07 | -3.674 | -4.328 |
| BXD08 | -3.219 | -4.157 |
| BXD09 | -3.306 | -4.533 |
| CAST | -4.443 | -5.642 |
| CCcont | -0.011 | -1.046 |
| DS01 | -5.006 | -6.0 |
| DS02 | -2.27 | -6.0 |
| DS04 | -4.112 | -4.659 |
| DS0c | -4.381 | -6.0 |
| GP01 | -0.576 | -2.637 |
| GP02 | -0.338 | -2.331 |
| GP0c | -0.379 | 0.031 |
| NOD | -2.302 | -4.914 |
| NZO | -4.028 | -6.0 |
| PWK | -2.842 | -5.789 |
| H37Rv_KO_CtpC | -3.064 | -4.242 |
| H37Rv_KO_CtpD | -1.944 | -2.771 |
| H37Rv_KO_Rv1272 | -2.297 | -3.683 |
| H37Rv_KO_SugABC | -1.715 | -1.29 |
| H37Rv_KO_MbtN | -0.775 | -0.066 |
| Trans05 | -3.074 | -3.755 |
| macrophage_unactivated | 0.189 | 1.471 |
| IL1 | 0.774 | -0.415 |
| Rapamycin | 1.056 | 0.598 |
| Tcell | -1.567 | 1.554 |
| GMCSF | -0.945 | 0.906 |
| IFNab | 0.441 | 2.6 |
| IFNg | -1.403 | -1.042 |
| IFNg_GMCSF1 | -1.697 | -0.547 |
| Rv1432_day32 | -4.519 | -4.919 |
| Rv1565c_day32 | -4.547 | -6.0 |
| secA2_input | 0.492 | 0.593 |
| delta_Rv3594 | 0.032 | 0.289 |
| delta_Rv3717 | -0.671 | 0.569 |
| delta_Rv3811 | -0.064 | 0.196 |
| delta_Rv0954 | 0.862 | 0.979 |
| PonA1 | 0.77 | 0.6 |
| EccD1_KO | 0.174 | 0.178 |
| EspI_KO | 0.297 | -0.285 |
| PE35_KO | 0.193 | -0.376 |
| PPE68_KO | 0.042 | -0.685 |
| glycerol2 | 1.275 | 0.0 |
| lignocerate | 0.315 | 1.303 |
| oleate | -0.065 | 0.0 |
| phosphatidylcholine | 0.77 | 0.819 |
| acetate | -0.043 | 0.437 |
| glucAc | -0.54 | 0.0 |
| Rv0950ko | 0.377 | 0.7 |
| Rv1096ko | 0.47 | 0.872 |
| Rv3684ko | 0.262 | 0.76 |
| delta_otsA_trehalose | -0.263 | -0.65 |