Top 10 genes with highest correlation to Rv0406c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2563/- | (cc=0.7984) | info on Rv2563/- |
| Rv2564/glnQ | (cc=0.7553) | info on Rv2564/glnQ |
| Rv0561c/- | (cc=0.74) | info on Rv0561c/- |
| Rv1592c/- | (cc=0.7148) | info on Rv1592c/- |
| Rv2383c/mbtB | (cc=0.6663) | info on Rv2383c/mbtB |
| Rv3283/sseA | (cc=0.6607) | info on Rv3283/sseA |
| Rv2418c/- | (cc=0.6601) | info on Rv2418c/- |
| Rv3651/- | (cc=0.6591) | info on Rv3651/- |
| Rv0243/fadA2 | (cc=0.6585) | info on Rv0243/fadA2 |
| Rv2379c/mbtF | (cc=0.6424) | info on Rv2379c/mbtF |
Correlation of Rv0406c/- with Rv2564/glnQ
Normalized LFCs for Rv0406c/-:
(description and provenance of datasets)
| Rv0406c/- | Rv2564/glnQ | |
| Fe_supp_jason_reseq | 1.271 | 2.013 |
| low_pH_jason_reseq | -0.669 | -0.333 |
| NO_jason_reseq | -2.746 | -1.853 |
| B6_jason_reseq | -0.444 | -1.519 |
| MHCII_jason_reseq | 0.577 | -0.932 |
| Isoniazid02 | 0.662 | 0.036 |
| Rifampicin4 | -1.034 | -2.134 |
| Ethambutol3 | 0.355 | 1.918 |
| Meropenem3 | 0.512 | 0.649 |
| Vancomycin16 | 0.801 | -0.578 |
| Rv2680_day32 | -1.486 | -2.923 |
| H37Rv_KO_MarP | -1.834 | 0.621 |
| hypoxia_3wks | -1.376 | -3.038 |
| hypoxia_6wks | -1.56 | -2.011 |
| glycerol | 0.762 | 0.676 |
| cholesterol | 0.333 | 0.44 |
| AJ | -1.55 | -3.514 |
| Bibs02 | -0.538 | -2.262 |
| Bibs02c | 0.203 | 0.652 |
| BL6 | -2.306 | -2.64 |
| BL6a | -0.913 | -1.086 |
| BXD01 | -1.496 | -3.107 |
| BXD010 | -2.642 | -1.829 |
| BXD011 | -1.921 | -2.911 |
| BXD03 | -2.456 | -1.721 |
| BXD04 | -2.246 | -2.264 |
| BXD05 | -3.033 | -3.076 |
| BXD06 | -2.285 | -2.714 |
| BXD07 | -2.857 | -2.716 |
| BXD08 | -1.232 | -2.704 |
| BXD09 | -2.371 | -3.352 |
| CAST | -2.002 | -0.429 |
| CCcont | -0.757 | 0.355 |
| DS01 | 1.316 | 2.322 |
| DS02 | 1.18 | 0.607 |
| DS04 | 1.31 | 2.805 |
| DS0c | 1.139 | 1.673 |
| GP01 | -2.109 | -2.355 |
| GP02 | -1.808 | -1.985 |
| GP0c | -1.088 | -3.102 |
| NOD | -1.246 | 0.552 |
| NZO | -2.349 | -2.766 |
| PWK | -1.384 | 1.212 |
| H37Rv_KO_CtpC | -0.785 | -0.95 |
| H37Rv_KO_CtpD | -1.885 | -0.764 |
| H37Rv_KO_Rv1272 | -1.52 | -1.846 |
| H37Rv_KO_SugABC | -2.115 | -1.5 |
| H37Rv_KO_MbtN | -2.24 | -1.952 |
| Trans05 | -1.893 | -2.986 |
| macrophage_unactivated | 0.496 | 0.947 |
| IL1 | -1.026 | -1.818 |
| Rapamycin | -1.062 | -0.543 |
| Tcell | 0.648 | 0.0 |
| GMCSF | 0.182 | 0.671 |
| IFNab | -0.296 | 0.163 |
| IFNg | -0.543 | -1.013 |
| IFNg_GMCSF1 | -0.638 | -0.179 |
| Rv1432_day32 | -1.724 | -3.206 |
| Rv1565c_day32 | 1.02 | -0.509 |
| secA2_input | 0.498 | -1.198 |
| delta_Rv3594 | -0.854 | -2.272 |
| delta_Rv3717 | -1.193 | -1.869 |
| delta_Rv3811 | -2.061 | -1.817 |
| delta_Rv0954 | 1.234 | 1.292 |
| PonA1 | 0.613 | 2.505 |
| EccD1_KO | 1.779 | 0.0 |
| EspI_KO | 0.299 | -0.274 |
| PE35_KO | 1.639 | 1.126 |
| PPE68_KO | 1.645 | 0.816 |
| glycerol2 | -2.404 | -1.572 |
| lignocerate | -1.577 | -0.049 |
| oleate | -3.281 | -2.139 |
| phosphatidylcholine | -1.172 | -0.874 |
| acetate | 0.101 | 1.119 |
| glucAc | -0.419 | 0.357 |
| Rv0950ko | 0.748 | 1.414 |
| Rv1096ko | 0.591 | 0.549 |
| Rv3684ko | -0.675 | 0.088 |
| delta_otsA_trehalose | 0.133 | 1.289 |