Top 10 genes with highest correlation to Rv0406c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2563/- | (cc=0.7984) | info on Rv2563/- |
| Rv2564/glnQ | (cc=0.7553) | info on Rv2564/glnQ |
| Rv0561c/- | (cc=0.74) | info on Rv0561c/- |
| Rv1592c/- | (cc=0.7148) | info on Rv1592c/- |
| Rv2383c/mbtB | (cc=0.6663) | info on Rv2383c/mbtB |
| Rv3283/sseA | (cc=0.6607) | info on Rv3283/sseA |
| Rv2418c/- | (cc=0.6601) | info on Rv2418c/- |
| Rv3651/- | (cc=0.6591) | info on Rv3651/- |
| Rv0243/fadA2 | (cc=0.6585) | info on Rv0243/fadA2 |
| Rv2379c/mbtF | (cc=0.6424) | info on Rv2379c/mbtF |
Correlation of Rv0406c/- with Rv0561c/-
Normalized LFCs for Rv0406c/-:
(description and provenance of datasets)
| Rv0406c/- | Rv0561c/- | |
| Fe_supp_jason_reseq | 1.271 | 2.559 |
| low_pH_jason_reseq | -0.669 | 0.0 |
| NO_jason_reseq | -2.746 | -0.995 |
| B6_jason_reseq | -0.444 | -0.421 |
| MHCII_jason_reseq | 0.577 | 0.742 |
| Isoniazid02 | 0.662 | -0.045 |
| Rifampicin4 | -1.034 | -1.887 |
| Ethambutol3 | 0.355 | -0.517 |
| Meropenem3 | 0.512 | -0.895 |
| Vancomycin16 | 0.801 | -1.021 |
| Rv2680_day32 | -1.486 | -0.554 |
| H37Rv_KO_MarP | -1.834 | -0.838 |
| hypoxia_3wks | -1.376 | -1.543 |
| hypoxia_6wks | -1.56 | -1.599 |
| glycerol | 0.762 | 2.098 |
| cholesterol | 0.333 | 1.736 |
| AJ | -1.55 | -1.531 |
| Bibs02 | -0.538 | -0.563 |
| Bibs02c | 0.203 | -0.353 |
| BL6 | -2.306 | -2.023 |
| BL6a | -0.913 | -1.148 |
| BXD01 | -1.496 | -2.107 |
| BXD010 | -2.642 | -2.072 |
| BXD011 | -1.921 | -1.711 |
| BXD03 | -2.456 | -2.187 |
| BXD04 | -2.246 | -1.877 |
| BXD05 | -3.033 | -2.042 |
| BXD06 | -2.285 | -2.159 |
| BXD07 | -2.857 | -2.101 |
| BXD08 | -1.232 | -2.151 |
| BXD09 | -2.371 | -2.273 |
| CAST | -2.002 | -2.181 |
| CCcont | -0.757 | -0.552 |
| DS01 | 1.316 | 1.685 |
| DS02 | 1.18 | -0.544 |
| DS04 | 1.31 | -0.911 |
| DS0c | 1.139 | 1.37 |
| GP01 | -2.109 | -1.409 |
| GP02 | -1.808 | -1.263 |
| GP0c | -1.088 | -2.103 |
| NOD | -1.246 | -0.903 |
| NZO | -2.349 | -2.381 |
| PWK | -1.384 | -1.137 |
| H37Rv_KO_CtpC | -0.785 | -0.941 |
| H37Rv_KO_CtpD | -1.885 | -1.603 |
| H37Rv_KO_Rv1272 | -1.52 | -0.872 |
| H37Rv_KO_SugABC | -2.115 | -1.414 |
| H37Rv_KO_MbtN | -2.24 | -1.471 |
| Trans05 | -1.893 | -1.983 |
| macrophage_unactivated | 0.496 | -0.316 |
| IL1 | -1.026 | -1.735 |
| Rapamycin | -1.062 | -1.795 |
| Tcell | 0.648 | -0.671 |
| GMCSF | 0.182 | -1.18 |
| IFNab | -0.296 | -0.623 |
| IFNg | -0.543 | -1.195 |
| IFNg_GMCSF1 | -0.638 | -0.314 |
| Rv1432_day32 | -1.724 | -0.632 |
| Rv1565c_day32 | 1.02 | 0.0 |
| secA2_input | 0.498 | 0.676 |
| delta_Rv3594 | -0.854 | -0.684 |
| delta_Rv3717 | -1.193 | -0.736 |
| delta_Rv3811 | -2.061 | -0.665 |
| delta_Rv0954 | 1.234 | 2.95 |
| PonA1 | 0.613 | 2.163 |
| EccD1_KO | 1.779 | -0.26 |
| EspI_KO | 0.299 | 0.739 |
| PE35_KO | 1.639 | 0.496 |
| PPE68_KO | 1.645 | 0.394 |
| glycerol2 | -2.404 | -1.366 |
| lignocerate | -1.577 | -0.759 |
| oleate | -3.281 | -3.187 |
| phosphatidylcholine | -1.172 | -0.036 |
| acetate | 0.101 | 1.25 |
| glucAc | -0.419 | 0.853 |
| Rv0950ko | 0.748 | -0.989 |
| Rv1096ko | 0.591 | -0.549 |
| Rv3684ko | -0.675 | -0.596 |
| delta_otsA_trehalose | 0.133 | -0.234 |