TnSeqCorr

Top 10 genes with highest correlation to Rv0333/-:

update plotcorrelationlink to info on gene
Rv2643/arsC (cc=0.549) info on Rv2643/arsC
Rv1108c/xseA (cc=0.5402) info on Rv1108c/xseA
Rv1164/narI (cc=0.5361) info on Rv1164/narI
Rv0418/lpqL (cc=0.5098) info on Rv0418/lpqL
Rv3445c/esxU (cc=0.5042) info on Rv3445c/esxU
Rv0368c/- (cc=0.4861) info on Rv0368c/-
Rv1279/- (cc=0.478) info on Rv1279/-
Rv2629/- (cc=0.4758) info on Rv2629/-
Rv3395A/- (cc=0.4758) info on Rv3395A/-
Rv0435c/- (cc=0.4755) info on Rv0435c/-

Correlation of Rv0333/- with Rv3445c/esxU

Normalized LFCs for Rv0333/-:
(description and provenance of datasets)
Rv0333/-Rv3445c/esxU
Fe_supp_jason_reseq

0.118

-0.854

low_pH_jason_reseq

-1.261

-0.778

NO_jason_reseq

-0.389

0.011

B6_jason_reseq

1.124

1.196

MHCII_jason_reseq

0.143

1.337

Isoniazid02

1.398

0.106

Rifampicin4

-0.853

-0.208

Ethambutol3

1.0

0.054

Meropenem3

4.998

1.584

Vancomycin16

-0.048

-0.061

Rv2680_day32

0.23

-0.72

H37Rv_KO_MarP

-0.896

-0.801

hypoxia_3wks

-0.203

-0.379

hypoxia_6wks

0.282

-0.205

glycerol

-0.622

-1.697

cholesterol

0.222

-0.468

AJ

-0.419

-0.069

Bibs02

1.237

0.633

Bibs02c

-0.105

0.33

BL6

0.642

-1.139

BL6a

-0.313

-0.598

BXD01

-1.937

-0.715

BXD010

-2.664

-1.243

BXD011

-0.342

-0.593

BXD03

-1.814

-0.593

BXD04

-0.905

-0.114

BXD05

-0.167

-1.909

BXD06

-0.678

-1.022

BXD07

-0.613

-1.357

BXD08

0.204

-0.366

BXD09

-1.128

-1.355

CAST

-0.746

-0.158

CCcont

-0.891

-1.298

DS01

0.121

0.956

DS02

-0.269

1.1

DS04

0.842

0.305

DS0c

-0.49

0.544

GP01

-0.205

0.275

GP02

0.563

0.421

GP0c

-0.613

0.528

NOD

-0.249

-0.83

NZO

0.426

-0.335

PWK

0.776

-0.033

H37Rv_KO_CtpC

0.201

-0.86

H37Rv_KO_CtpD

-2.441

-3.872

H37Rv_KO_Rv1272

-1.764

-3.257

H37Rv_KO_SugABC

0.934

-1.838

H37Rv_KO_MbtN

-2.144

-0.933

Trans05

-0.917

-1.718

macrophage_unactivated

0.186

0.379

IL1

0.905

-0.214

Rapamycin

1.01

-0.301

Tcell

-0.951

0.254

GMCSF

0.673

0.528

IFNab

0.2

-0.2

IFNg

0.492

-1.053

IFNg_GMCSF1

-0.047

1.109

Rv1432_day32

2.117

0.567

Rv1565c_day32

0.006

0.232

secA2_input

0.485

2.519

delta_Rv3594

-2.109

0.0

delta_Rv3717

-1.453

-0.189

delta_Rv3811

-0.995

-0.335

delta_Rv0954

-1.093

0.758

PonA1

-0.723

0.427

EccD1_KO

0.569

0.47

EspI_KO

1.554

0.747

PE35_KO

-0.359

1.158

PPE68_KO

0.797

-0.022

glycerol2

-0.59

0.867

lignocerate

-0.022

0.96

oleate

0.051

0.988

phosphatidylcholine

0.148

0.81

acetate

1.303

1.335

glucAc

-0.314

0.023

Rv0950ko

0.181

1.375

Rv1096ko

0.884

2.576

Rv3684ko

0.842

1.772

delta_otsA_trehalose

-1.479

-1.792