Top 10 genes with highest correlation to Rv0125/pepA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0677c/mmpS5 | (cc=0.5289) | info on Rv0677c/mmpS5 |
| Rv2217/lipB | (cc=0.4861) | info on Rv2217/lipB |
| Rv0392c/ndhA | (cc=0.4671) | info on Rv0392c/ndhA |
| Rv3661/- | (cc=0.4616) | info on Rv3661/- |
| Rv0998/- | (cc=0.4524) | info on Rv0998/- |
| Rv0597c/- | (cc=0.4411) | info on Rv0597c/- |
| Rv2116/lppK | (cc=0.4363) | info on Rv2116/lppK |
| Rv0038/- | (cc=0.4349) | info on Rv0038/- |
| Rv2366c/- | (cc=0.4213) | info on Rv2366c/- |
| Rv0631c/recC | (cc=0.4211) | info on Rv0631c/recC |
Correlation of Rv0125/pepA with Rv0038/-
Normalized LFCs for Rv0125/pepA:
(description and provenance of datasets)
| Rv0125/pepA | Rv0038/- | |
| Fe_supp_jason_reseq | -0.358 | 0.639 |
| low_pH_jason_reseq | -0.261 | -2.28 |
| NO_jason_reseq | -0.672 | -1.809 |
| B6_jason_reseq | -1.208 | -0.172 |
| MHCII_jason_reseq | -0.294 | 0.482 |
| Isoniazid02 | 0.186 | 1.078 |
| Rifampicin4 | 0.785 | -0.125 |
| Ethambutol3 | 1.408 | 1.394 |
| Meropenem3 | 1.628 | 0.518 |
| Vancomycin16 | -0.371 | 0.0 |
| Rv2680_day32 | 0.33 | 0.349 |
| H37Rv_KO_MarP | -0.363 | -0.707 |
| hypoxia_3wks | 0.207 | -0.67 |
| hypoxia_6wks | -0.967 | -0.883 |
| glycerol | -0.625 | 0.914 |
| cholesterol | -0.415 | 1.171 |
| AJ | -0.518 | -0.745 |
| Bibs02 | 0.588 | 0.525 |
| Bibs02c | 0.903 | 1.638 |
| BL6 | -0.011 | -1.116 |
| BL6a | -0.342 | 0.914 |
| BXD01 | 0.202 | -0.304 |
| BXD010 | -0.246 | -0.165 |
| BXD011 | 0.216 | -0.985 |
| BXD03 | -0.359 | -1.083 |
| BXD04 | 0.45 | -1.363 |
| BXD05 | 0.044 | -0.28 |
| BXD06 | 0.033 | -0.323 |
| BXD07 | -0.525 | -0.975 |
| BXD08 | -0.243 | -0.835 |
| BXD09 | -0.388 | -0.558 |
| CAST | -0.928 | -2.129 |
| CCcont | 0.12 | 1.46 |
| DS01 | 0.433 | 1.406 |
| DS02 | 0.29 | -0.232 |
| DS04 | 1.397 | 0.887 |
| DS0c | 0.321 | 1.397 |
| GP01 | 0.62 | -0.027 |
| GP02 | -0.832 | -0.783 |
| GP0c | 0.135 | 0.109 |
| NOD | 0.475 | -1.302 |
| NZO | 0.366 | -0.198 |
| PWK | -1.279 | -1.689 |
| H37Rv_KO_CtpC | -0.985 | -1.101 |
| H37Rv_KO_CtpD | 0.392 | -0.052 |
| H37Rv_KO_Rv1272 | -0.604 | 0.323 |
| H37Rv_KO_SugABC | 0.049 | -0.282 |
| H37Rv_KO_MbtN | -0.148 | 0.28 |
| Trans05 | -0.022 | -1.208 |
| macrophage_unactivated | -0.761 | -0.287 |
| IL1 | 0.122 | -1.456 |
| Rapamycin | 0.0 | -1.212 |
| Tcell | -0.427 | -1.763 |
| GMCSF | -0.15 | -1.397 |
| IFNab | 0.732 | -0.695 |
| IFNg | -0.23 | -1.962 |
| IFNg_GMCSF1 | -0.088 | -1.543 |
| Rv1432_day32 | -0.763 | -0.143 |
| Rv1565c_day32 | -0.509 | -0.603 |
| secA2_input | 0.961 | -0.085 |
| delta_Rv3594 | 0.511 | 1.597 |
| delta_Rv3717 | 1.208 | 1.212 |
| delta_Rv3811 | 1.136 | 1.057 |
| delta_Rv0954 | 1.003 | 2.218 |
| PonA1 | 0.757 | 1.599 |
| EccD1_KO | -0.674 | 0.0 |
| EspI_KO | 0.402 | 0.405 |
| PE35_KO | -0.779 | 0.922 |
| PPE68_KO | -0.278 | 0.378 |
| glycerol2 | -1.115 | 0.544 |
| lignocerate | -1.42 | -0.587 |
| oleate | -1.109 | -1.113 |
| phosphatidylcholine | -0.702 | -0.353 |
| acetate | -0.176 | 0.657 |
| glucAc | -0.65 | 0.653 |
| Rv0950ko | 0.383 | 0.88 |
| Rv1096ko | 0.341 | 0.199 |
| Rv3684ko | 0.501 | -0.2 |
| delta_otsA_trehalose | -0.382 | 0.056 |