Top 10 genes with highest correlation to Rv0085/hycP:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0779c/- | (cc=0.4544) | info on Rv0779c/- |
| Rv0078/- | (cc=0.4306) | info on Rv0078/- |
| Rv1975/- | (cc=0.425) | info on Rv1975/- |
| Rv3507/PE_PGRS53 | (cc=0.4169) | info on Rv3507/PE_PGRS53 |
| Rv0618/galTa | (cc=0.4043) | info on Rv0618/galTa |
| Rv3349c/- | (cc=0.3992) | info on Rv3349c/- |
| Rv1775/- | (cc=0.3989) | info on Rv1775/- |
| Rv3700c/- | (cc=0.3955) | info on Rv3700c/- |
| Rv2389c/rpfD | (cc=0.3847) | info on Rv2389c/rpfD |
| Rv2263/- | (cc=0.3841) | info on Rv2263/- |
Correlation of Rv0085/hycP with Rv3700c/-
Normalized LFCs for Rv0085/hycP:
(description and provenance of datasets)
| Rv0085/hycP | Rv3700c/- | |
| Fe_supp_jason_reseq | -2.502 | -0.95 |
| low_pH_jason_reseq | -0.607 | -0.574 |
| NO_jason_reseq | 0.62 | 0.045 |
| B6_jason_reseq | -1.987 | 0.073 |
| MHCII_jason_reseq | -1.986 | 0.782 |
| Isoniazid02 | -0.207 | 0.557 |
| Rifampicin4 | 0.969 | 1.565 |
| Ethambutol3 | 0.392 | 1.165 |
| Meropenem3 | 0.839 | 0.97 |
| Vancomycin16 | 0.756 | 0.931 |
| Rv2680_day32 | 0.25 | -0.64 |
| H37Rv_KO_MarP | 1.472 | 0.395 |
| hypoxia_3wks | 0.478 | 0.794 |
| hypoxia_6wks | -0.274 | 0.136 |
| glycerol | 1.121 | 0.48 |
| cholesterol | 0.781 | -0.226 |
| AJ | -0.953 | 0.592 |
| Bibs02 | 1.751 | 1.016 |
| Bibs02c | -2.004 | 0.262 |
| BL6 | -0.906 | 0.181 |
| BL6a | -2.492 | -0.61 |
| BXD01 | 0.191 | 0.483 |
| BXD010 | -1.612 | 0.315 |
| BXD011 | -1.718 | 0.069 |
| BXD03 | -1.824 | -0.565 |
| BXD04 | -0.372 | -1.041 |
| BXD05 | -1.815 | -1.167 |
| BXD06 | -1.8 | -0.58 |
| BXD07 | -1.156 | -0.674 |
| BXD08 | -0.496 | -0.061 |
| BXD09 | -1.542 | -0.684 |
| CAST | 0.284 | 0.289 |
| CCcont | -1.639 | -0.6 |
| DS01 | 0.399 | 1.153 |
| DS02 | 1.429 | -0.339 |
| DS04 | -0.873 | 0.374 |
| DS0c | -0.506 | 0.437 |
| GP01 | -0.08 | -1.409 |
| GP02 | -1.047 | -0.482 |
| GP0c | 1.702 | 0.542 |
| NOD | 1.028 | 1.538 |
| NZO | -0.67 | -0.471 |
| PWK | -1.526 | 0.227 |
| H37Rv_KO_CtpC | 0.238 | -0.706 |
| H37Rv_KO_CtpD | -1.39 | -0.23 |
| H37Rv_KO_Rv1272 | 1.093 | -1.374 |
| H37Rv_KO_SugABC | -1.163 | -0.398 |
| H37Rv_KO_MbtN | 1.269 | -0.161 |
| Trans05 | -1.017 | -0.309 |
| macrophage_unactivated | 0.0 | 0.079 |
| IL1 | 0.0 | 0.359 |
| Rapamycin | -1.697 | 0.715 |
| Tcell | 0.0 | 1.711 |
| GMCSF | 0.486 | -0.137 |
| IFNab | -0.877 | 0.076 |
| IFNg | 2.758 | 1.307 |
| IFNg_GMCSF1 | 1.254 | 1.185 |
| Rv1432_day32 | 0.18 | -0.265 |
| Rv1565c_day32 | -0.218 | 0.644 |
| secA2_input | 0.121 | 0.6 |
| delta_Rv3594 | -1.881 | -0.739 |
| delta_Rv3717 | -0.766 | -0.252 |
| delta_Rv3811 | -0.515 | -0.134 |
| delta_Rv0954 | -0.526 | 0.454 |
| PonA1 | 0.772 | 0.383 |
| EccD1_KO | -2.654 | 0.122 |
| EspI_KO | -0.485 | -0.071 |
| PE35_KO | -0.204 | -0.703 |
| PPE68_KO | -0.074 | -0.726 |
| glycerol2 | -2.33 | -0.02 |
| lignocerate | -2.288 | -0.104 |
| oleate | -0.553 | 0.132 |
| phosphatidylcholine | -1.625 | 0.183 |
| acetate | -2.452 | -0.07 |
| glucAc | -3.629 | -0.387 |
| Rv0950ko | -0.078 | -0.19 |
| Rv1096ko | 0.075 | 1.915 |
| Rv3684ko | 0.835 | 0.91 |
| delta_otsA_trehalose | -0.489 | -1.201 |