Top 10 genes with highest correlation to Rv0085/hycP:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0779c/- | (cc=0.4544) | info on Rv0779c/- |
| Rv0078/- | (cc=0.4306) | info on Rv0078/- |
| Rv1975/- | (cc=0.425) | info on Rv1975/- |
| Rv3507/PE_PGRS53 | (cc=0.4169) | info on Rv3507/PE_PGRS53 |
| Rv0618/galTa | (cc=0.4043) | info on Rv0618/galTa |
| Rv3349c/- | (cc=0.3992) | info on Rv3349c/- |
| Rv1775/- | (cc=0.3989) | info on Rv1775/- |
| Rv3700c/- | (cc=0.3955) | info on Rv3700c/- |
| Rv2389c/rpfD | (cc=0.3847) | info on Rv2389c/rpfD |
| Rv2263/- | (cc=0.3841) | info on Rv2263/- |
Correlation of Rv0085/hycP with Rv1775/-
Normalized LFCs for Rv0085/hycP:
(description and provenance of datasets)
| Rv0085/hycP | Rv1775/- | |
| Fe_supp_jason_reseq | -2.502 | -0.074 |
| low_pH_jason_reseq | -0.607 | 0.077 |
| NO_jason_reseq | 0.62 | 1.958 |
| B6_jason_reseq | -1.987 | 1.003 |
| MHCII_jason_reseq | -1.986 | 1.46 |
| Isoniazid02 | -0.207 | 0.774 |
| Rifampicin4 | 0.969 | 0.084 |
| Ethambutol3 | 0.392 | 0.537 |
| Meropenem3 | 0.839 | 3.173 |
| Vancomycin16 | 0.756 | 0.395 |
| Rv2680_day32 | 0.25 | 1.615 |
| H37Rv_KO_MarP | 1.472 | 0.047 |
| hypoxia_3wks | 0.478 | -0.247 |
| hypoxia_6wks | -0.274 | 0.205 |
| glycerol | 1.121 | 1.973 |
| cholesterol | 0.781 | 0.317 |
| AJ | -0.953 | -0.397 |
| Bibs02 | 1.751 | 1.163 |
| Bibs02c | -2.004 | 0.499 |
| BL6 | -0.906 | -1.067 |
| BL6a | -2.492 | -0.202 |
| BXD01 | 0.191 | -0.912 |
| BXD010 | -1.612 | -0.131 |
| BXD011 | -1.718 | -0.805 |
| BXD03 | -1.824 | -0.251 |
| BXD04 | -0.372 | -1.162 |
| BXD05 | -1.815 | -0.911 |
| BXD06 | -1.8 | -1.0 |
| BXD07 | -1.156 | -0.647 |
| BXD08 | -0.496 | -0.41 |
| BXD09 | -1.542 | -0.856 |
| CAST | 0.284 | -0.057 |
| CCcont | -1.639 | -0.816 |
| DS01 | 0.399 | -0.087 |
| DS02 | 1.429 | -0.372 |
| DS04 | -0.873 | 0.884 |
| DS0c | -0.506 | -0.5 |
| GP01 | -0.08 | -0.461 |
| GP02 | -1.047 | 1.066 |
| GP0c | 1.702 | 0.091 |
| NOD | 1.028 | 0.556 |
| NZO | -0.67 | 0.048 |
| PWK | -1.526 | -0.88 |
| H37Rv_KO_CtpC | 0.238 | 0.876 |
| H37Rv_KO_CtpD | -1.39 | -1.533 |
| H37Rv_KO_Rv1272 | 1.093 | 0.598 |
| H37Rv_KO_SugABC | -1.163 | -1.366 |
| H37Rv_KO_MbtN | 1.269 | 1.432 |
| Trans05 | -1.017 | -0.081 |
| macrophage_unactivated | 0.0 | -2.045 |
| IL1 | 0.0 | -0.43 |
| Rapamycin | -1.697 | -1.433 |
| Tcell | 0.0 | 0.244 |
| GMCSF | 0.486 | -2.482 |
| IFNab | -0.877 | -0.339 |
| IFNg | 2.758 | -0.342 |
| IFNg_GMCSF1 | 1.254 | 0.189 |
| Rv1432_day32 | 0.18 | 0.541 |
| Rv1565c_day32 | -0.218 | 0.289 |
| secA2_input | 0.121 | -0.59 |
| delta_Rv3594 | -1.881 | -0.133 |
| delta_Rv3717 | -0.766 | -0.091 |
| delta_Rv3811 | -0.515 | 0.327 |
| delta_Rv0954 | -0.526 | -0.946 |
| PonA1 | 0.772 | -0.1 |
| EccD1_KO | -2.654 | -0.691 |
| EspI_KO | -0.485 | -0.55 |
| PE35_KO | -0.204 | 0.213 |
| PPE68_KO | -0.074 | 0.234 |
| glycerol2 | -2.33 | -0.942 |
| lignocerate | -2.288 | -1.294 |
| oleate | -0.553 | -0.089 |
| phosphatidylcholine | -1.625 | -0.179 |
| acetate | -2.452 | -0.997 |
| glucAc | -3.629 | -1.754 |
| Rv0950ko | -0.078 | -0.292 |
| Rv1096ko | 0.075 | 1.746 |
| Rv3684ko | 0.835 | 0.891 |
| delta_otsA_trehalose | -0.489 | 0.404 |