Top 10 genes with highest correlation to Rv0085/hycP:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0779c/- | (cc=0.4544) | info on Rv0779c/- |
| Rv0078/- | (cc=0.4306) | info on Rv0078/- |
| Rv1975/- | (cc=0.425) | info on Rv1975/- |
| Rv3507/PE_PGRS53 | (cc=0.4169) | info on Rv3507/PE_PGRS53 |
| Rv0618/galTa | (cc=0.4043) | info on Rv0618/galTa |
| Rv3349c/- | (cc=0.3992) | info on Rv3349c/- |
| Rv1775/- | (cc=0.3989) | info on Rv1775/- |
| Rv3700c/- | (cc=0.3955) | info on Rv3700c/- |
| Rv2389c/rpfD | (cc=0.3847) | info on Rv2389c/rpfD |
| Rv2263/- | (cc=0.3841) | info on Rv2263/- |
Correlation of Rv0085/hycP with Rv0078/-
Normalized LFCs for Rv0085/hycP:
(description and provenance of datasets)
| Rv0085/hycP | Rv0078/- | |
| Fe_supp_jason_reseq | -2.502 | -0.23 |
| low_pH_jason_reseq | -0.607 | -0.144 |
| NO_jason_reseq | 0.62 | 0.903 |
| B6_jason_reseq | -1.987 | -1.237 |
| MHCII_jason_reseq | -1.986 | -0.301 |
| Isoniazid02 | -0.207 | -1.112 |
| Rifampicin4 | 0.969 | -0.899 |
| Ethambutol3 | 0.392 | -0.074 |
| Meropenem3 | 0.839 | -0.915 |
| Vancomycin16 | 0.756 | -0.565 |
| Rv2680_day32 | 0.25 | 0.235 |
| H37Rv_KO_MarP | 1.472 | 0.093 |
| hypoxia_3wks | 0.478 | 1.284 |
| hypoxia_6wks | -0.274 | 0.288 |
| glycerol | 1.121 | -0.521 |
| cholesterol | 0.781 | -0.789 |
| AJ | -0.953 | -0.239 |
| Bibs02 | 1.751 | -0.397 |
| Bibs02c | -2.004 | -0.54 |
| BL6 | -0.906 | -1.52 |
| BL6a | -2.492 | 0.0 |
| BXD01 | 0.191 | -0.392 |
| BXD010 | -1.612 | -0.564 |
| BXD011 | -1.718 | -0.086 |
| BXD03 | -1.824 | -0.98 |
| BXD04 | -0.372 | -0.372 |
| BXD05 | -1.815 | 0.71 |
| BXD06 | -1.8 | 0.24 |
| BXD07 | -1.156 | 0.0 |
| BXD08 | -0.496 | -0.521 |
| BXD09 | -1.542 | 0.131 |
| CAST | 0.284 | -0.692 |
| CCcont | -1.639 | -1.082 |
| DS01 | 0.399 | 0.221 |
| DS02 | 1.429 | 1.467 |
| DS04 | -0.873 | -1.405 |
| DS0c | -0.506 | 0.0 |
| GP01 | -0.08 | 0.062 |
| GP02 | -1.047 | -0.929 |
| GP0c | 1.702 | -0.231 |
| NOD | 1.028 | 1.048 |
| NZO | -0.67 | -0.98 |
| PWK | -1.526 | -0.065 |
| H37Rv_KO_CtpC | 0.238 | 0.292 |
| H37Rv_KO_CtpD | -1.39 | 2.097 |
| H37Rv_KO_Rv1272 | 1.093 | 0.998 |
| H37Rv_KO_SugABC | -1.163 | -0.067 |
| H37Rv_KO_MbtN | 1.269 | 0.677 |
| Trans05 | -1.017 | 0.161 |
| macrophage_unactivated | 0.0 | 1.042 |
| IL1 | 0.0 | 0.463 |
| Rapamycin | -1.697 | 0.126 |
| Tcell | 0.0 | 1.075 |
| GMCSF | 0.486 | -1.133 |
| IFNab | -0.877 | -0.529 |
| IFNg | 2.758 | 0.794 |
| IFNg_GMCSF1 | 1.254 | 0.606 |
| Rv1432_day32 | 0.18 | 0.454 |
| Rv1565c_day32 | -0.218 | -0.455 |
| secA2_input | 0.121 | -1.597 |
| delta_Rv3594 | -1.881 | -1.71 |
| delta_Rv3717 | -0.766 | -1.047 |
| delta_Rv3811 | -0.515 | -0.846 |
| delta_Rv0954 | -0.526 | -0.447 |
| PonA1 | 0.772 | -1.554 |
| EccD1_KO | -2.654 | -0.316 |
| EspI_KO | -0.485 | -0.493 |
| PE35_KO | -0.204 | 2.053 |
| PPE68_KO | -0.074 | 1.401 |
| glycerol2 | -2.33 | -3.723 |
| lignocerate | -2.288 | -3.328 |
| oleate | -0.553 | -2.786 |
| phosphatidylcholine | -1.625 | -2.598 |
| acetate | -2.452 | -1.386 |
| glucAc | -3.629 | -4.385 |
| Rv0950ko | -0.078 | 1.025 |
| Rv1096ko | 0.075 | 0.917 |
| Rv3684ko | 0.835 | 0.491 |
| delta_otsA_trehalose | -0.489 | 0.77 |