Top 10 genes with highest correlation to Rv0085/hycP:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0779c/- | (cc=0.4544) | info on Rv0779c/- |
| Rv0078/- | (cc=0.4306) | info on Rv0078/- |
| Rv1975/- | (cc=0.425) | info on Rv1975/- |
| Rv3507/PE_PGRS53 | (cc=0.4169) | info on Rv3507/PE_PGRS53 |
| Rv0618/galTa | (cc=0.4043) | info on Rv0618/galTa |
| Rv3349c/- | (cc=0.3992) | info on Rv3349c/- |
| Rv1775/- | (cc=0.3989) | info on Rv1775/- |
| Rv3700c/- | (cc=0.3955) | info on Rv3700c/- |
| Rv2389c/rpfD | (cc=0.3847) | info on Rv2389c/rpfD |
| Rv2263/- | (cc=0.3841) | info on Rv2263/- |
Correlation of Rv0085/hycP with Rv3349c/-
Normalized LFCs for Rv0085/hycP:
(description and provenance of datasets)
| Rv0085/hycP | Rv3349c/- | |
| Fe_supp_jason_reseq | -2.502 | 0.333 |
| low_pH_jason_reseq | -0.607 | -0.294 |
| NO_jason_reseq | 0.62 | -1.659 |
| B6_jason_reseq | -1.987 | 0.516 |
| MHCII_jason_reseq | -1.986 | 0.083 |
| Isoniazid02 | -0.207 | 0.06 |
| Rifampicin4 | 0.969 | 0.412 |
| Ethambutol3 | 0.392 | 0.085 |
| Meropenem3 | 0.839 | 0.875 |
| Vancomycin16 | 0.756 | -0.162 |
| Rv2680_day32 | 0.25 | 0.819 |
| H37Rv_KO_MarP | 1.472 | 0.093 |
| hypoxia_3wks | 0.478 | 0.762 |
| hypoxia_6wks | -0.274 | 0.555 |
| glycerol | 1.121 | -0.092 |
| cholesterol | 0.781 | 2.255 |
| AJ | -0.953 | 0.709 |
| Bibs02 | 1.751 | 1.681 |
| Bibs02c | -2.004 | 0.299 |
| BL6 | -0.906 | -1.566 |
| BL6a | -2.492 | 0.375 |
| BXD01 | 0.191 | -0.536 |
| BXD010 | -1.612 | -1.117 |
| BXD011 | -1.718 | -0.375 |
| BXD03 | -1.824 | -0.223 |
| BXD04 | -0.372 | -0.183 |
| BXD05 | -1.815 | 0.046 |
| BXD06 | -1.8 | -0.102 |
| BXD07 | -1.156 | -0.611 |
| BXD08 | -0.496 | -1.541 |
| BXD09 | -1.542 | -0.432 |
| CAST | 0.284 | 0.687 |
| CCcont | -1.639 | -0.571 |
| DS01 | 0.399 | 0.135 |
| DS02 | 1.429 | -0.334 |
| DS04 | -0.873 | -1.008 |
| DS0c | -0.506 | 0.374 |
| GP01 | -0.08 | -1.285 |
| GP02 | -1.047 | -1.7 |
| GP0c | 1.702 | -0.751 |
| NOD | 1.028 | -0.161 |
| NZO | -0.67 | -1.546 |
| PWK | -1.526 | -0.01 |
| H37Rv_KO_CtpC | 0.238 | -0.125 |
| H37Rv_KO_CtpD | -1.39 | -0.077 |
| H37Rv_KO_Rv1272 | 1.093 | 1.673 |
| H37Rv_KO_SugABC | -1.163 | -1.676 |
| H37Rv_KO_MbtN | 1.269 | 1.389 |
| Trans05 | -1.017 | -0.428 |
| macrophage_unactivated | 0.0 | -0.17 |
| IL1 | 0.0 | 1.489 |
| Rapamycin | -1.697 | 1.623 |
| Tcell | 0.0 | -0.375 |
| GMCSF | 0.486 | 0.264 |
| IFNab | -0.877 | 0.837 |
| IFNg | 2.758 | 0.826 |
| IFNg_GMCSF1 | 1.254 | 0.823 |
| Rv1432_day32 | 0.18 | 0.465 |
| Rv1565c_day32 | -0.218 | -0.592 |
| secA2_input | 0.121 | 0.665 |
| delta_Rv3594 | -1.881 | -0.999 |
| delta_Rv3717 | -0.766 | 0.18 |
| delta_Rv3811 | -0.515 | 0.326 |
| delta_Rv0954 | -0.526 | 0.218 |
| PonA1 | 0.772 | -0.16 |
| EccD1_KO | -2.654 | -0.74 |
| EspI_KO | -0.485 | -0.411 |
| PE35_KO | -0.204 | -0.105 |
| PPE68_KO | -0.074 | 0.176 |
| glycerol2 | -2.33 | -2.385 |
| lignocerate | -2.288 | -2.03 |
| oleate | -0.553 | -1.511 |
| phosphatidylcholine | -1.625 | -1.724 |
| acetate | -2.452 | -1.458 |
| glucAc | -3.629 | -0.98 |
| Rv0950ko | -0.078 | 0.078 |
| Rv1096ko | 0.075 | -0.86 |
| Rv3684ko | 0.835 | -0.386 |
| delta_otsA_trehalose | -0.489 | -0.431 |