Top 10 genes with highest correlation to Rv0085/hycP:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0779c/- | (cc=0.4544) | info on Rv0779c/- |
| Rv0078/- | (cc=0.4306) | info on Rv0078/- |
| Rv1975/- | (cc=0.425) | info on Rv1975/- |
| Rv3507/PE_PGRS53 | (cc=0.4169) | info on Rv3507/PE_PGRS53 |
| Rv0618/galTa | (cc=0.4043) | info on Rv0618/galTa |
| Rv3349c/- | (cc=0.3992) | info on Rv3349c/- |
| Rv1775/- | (cc=0.3989) | info on Rv1775/- |
| Rv3700c/- | (cc=0.3955) | info on Rv3700c/- |
| Rv2389c/rpfD | (cc=0.3847) | info on Rv2389c/rpfD |
| Rv2263/- | (cc=0.3841) | info on Rv2263/- |
Correlation of Rv0085/hycP with Rv2389c/rpfD
Normalized LFCs for Rv0085/hycP:
(description and provenance of datasets)
| Rv0085/hycP | Rv2389c/rpfD | |
| Fe_supp_jason_reseq | -2.502 | -0.362 |
| low_pH_jason_reseq | -0.607 | -0.435 |
| NO_jason_reseq | 0.62 | 0.197 |
| B6_jason_reseq | -1.987 | -0.716 |
| MHCII_jason_reseq | -1.986 | -0.625 |
| Isoniazid02 | -0.207 | 0.086 |
| Rifampicin4 | 0.969 | 0.049 |
| Ethambutol3 | 0.392 | -0.016 |
| Meropenem3 | 0.839 | 2.093 |
| Vancomycin16 | 0.756 | -0.064 |
| Rv2680_day32 | 0.25 | 0.647 |
| H37Rv_KO_MarP | 1.472 | 0.553 |
| hypoxia_3wks | 0.478 | 0.355 |
| hypoxia_6wks | -0.274 | -0.019 |
| glycerol | 1.121 | 0.891 |
| cholesterol | 0.781 | -0.168 |
| AJ | -0.953 | 0.0 |
| Bibs02 | 1.751 | -0.17 |
| Bibs02c | -2.004 | 0.435 |
| BL6 | -0.906 | 0.489 |
| BL6a | -2.492 | 0.672 |
| BXD01 | 0.191 | -0.141 |
| BXD010 | -1.612 | 0.577 |
| BXD011 | -1.718 | 0.542 |
| BXD03 | -1.824 | 0.242 |
| BXD04 | -0.372 | 0.34 |
| BXD05 | -1.815 | 0.563 |
| BXD06 | -1.8 | 0.173 |
| BXD07 | -1.156 | 0.135 |
| BXD08 | -0.496 | -0.097 |
| BXD09 | -1.542 | 0.337 |
| CAST | 0.284 | 0.135 |
| CCcont | -1.639 | -0.29 |
| DS01 | 0.399 | 0.026 |
| DS02 | 1.429 | -0.047 |
| DS04 | -0.873 | 0.342 |
| DS0c | -0.506 | -0.286 |
| GP01 | -0.08 | 0.004 |
| GP02 | -1.047 | 0.234 |
| GP0c | 1.702 | 0.43 |
| NOD | 1.028 | 0.298 |
| NZO | -0.67 | -0.176 |
| PWK | -1.526 | 0.128 |
| H37Rv_KO_CtpC | 0.238 | 0.735 |
| H37Rv_KO_CtpD | -1.39 | 0.486 |
| H37Rv_KO_Rv1272 | 1.093 | 1.233 |
| H37Rv_KO_SugABC | -1.163 | 0.781 |
| H37Rv_KO_MbtN | 1.269 | 0.418 |
| Trans05 | -1.017 | 0.521 |
| macrophage_unactivated | 0.0 | 0.597 |
| IL1 | 0.0 | 0.887 |
| Rapamycin | -1.697 | 1.148 |
| Tcell | 0.0 | -0.994 |
| GMCSF | 0.486 | 0.969 |
| IFNab | -0.877 | 0.865 |
| IFNg | 2.758 | 1.264 |
| IFNg_GMCSF1 | 1.254 | 1.458 |
| Rv1432_day32 | 0.18 | 0.332 |
| Rv1565c_day32 | -0.218 | 0.482 |
| secA2_input | 0.121 | -0.178 |
| delta_Rv3594 | -1.881 | -0.202 |
| delta_Rv3717 | -0.766 | -0.321 |
| delta_Rv3811 | -0.515 | -0.586 |
| delta_Rv0954 | -0.526 | -0.295 |
| PonA1 | 0.772 | 0.614 |
| EccD1_KO | -2.654 | 0.812 |
| EspI_KO | -0.485 | 0.633 |
| PE35_KO | -0.204 | 0.534 |
| PPE68_KO | -0.074 | 0.195 |
| glycerol2 | -2.33 | -0.581 |
| lignocerate | -2.288 | -1.078 |
| oleate | -0.553 | 0.302 |
| phosphatidylcholine | -1.625 | -0.294 |
| acetate | -2.452 | -1.282 |
| glucAc | -3.629 | -1.315 |
| Rv0950ko | -0.078 | 0.443 |
| Rv1096ko | 0.075 | 0.169 |
| Rv3684ko | 0.835 | 0.144 |
| delta_otsA_trehalose | -0.489 | 1.314 |