Top 10 genes with highest correlation to Rv0085/hycP:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0779c/- | (cc=0.4544) | info on Rv0779c/- |
| Rv0078/- | (cc=0.4306) | info on Rv0078/- |
| Rv1975/- | (cc=0.425) | info on Rv1975/- |
| Rv3507/PE_PGRS53 | (cc=0.4169) | info on Rv3507/PE_PGRS53 |
| Rv0618/galTa | (cc=0.4043) | info on Rv0618/galTa |
| Rv3349c/- | (cc=0.3992) | info on Rv3349c/- |
| Rv1775/- | (cc=0.3989) | info on Rv1775/- |
| Rv3700c/- | (cc=0.3955) | info on Rv3700c/- |
| Rv2389c/rpfD | (cc=0.3847) | info on Rv2389c/rpfD |
| Rv2263/- | (cc=0.3841) | info on Rv2263/- |
Correlation of Rv0085/hycP with Rv0779c/-
Normalized LFCs for Rv0085/hycP:
(description and provenance of datasets)
| Rv0085/hycP | Rv0779c/- | |
| Fe_supp_jason_reseq | -2.502 | -0.363 |
| low_pH_jason_reseq | -0.607 | 0.263 |
| NO_jason_reseq | 0.62 | -0.126 |
| B6_jason_reseq | -1.987 | -2.475 |
| MHCII_jason_reseq | -1.986 | -2.55 |
| Isoniazid02 | -0.207 | 1.315 |
| Rifampicin4 | 0.969 | 0.36 |
| Ethambutol3 | 0.392 | 0.213 |
| Meropenem3 | 0.839 | -0.371 |
| Vancomycin16 | 0.756 | 0.878 |
| Rv2680_day32 | 0.25 | -1.013 |
| H37Rv_KO_MarP | 1.472 | -0.258 |
| hypoxia_3wks | 0.478 | 0.49 |
| hypoxia_6wks | -0.274 | -0.796 |
| glycerol | 1.121 | 0.195 |
| cholesterol | 0.781 | 0.118 |
| AJ | -0.953 | 0.114 |
| Bibs02 | 1.751 | -0.791 |
| Bibs02c | -2.004 | -1.446 |
| BL6 | -0.906 | -2.385 |
| BL6a | -2.492 | -1.306 |
| BXD01 | 0.191 | -0.292 |
| BXD010 | -1.612 | 0.341 |
| BXD011 | -1.718 | -1.32 |
| BXD03 | -1.824 | -1.464 |
| BXD04 | -0.372 | -0.278 |
| BXD05 | -1.815 | -1.277 |
| BXD06 | -1.8 | -0.543 |
| BXD07 | -1.156 | -1.05 |
| BXD08 | -0.496 | -0.299 |
| BXD09 | -1.542 | -0.681 |
| CAST | 0.284 | -0.377 |
| CCcont | -1.639 | -2.847 |
| DS01 | 0.399 | 0.599 |
| DS02 | 1.429 | 1.977 |
| DS04 | -0.873 | 0.887 |
| DS0c | -0.506 | 0.401 |
| GP01 | -0.08 | -0.715 |
| GP02 | -1.047 | -1.075 |
| GP0c | 1.702 | 1.507 |
| NOD | 1.028 | -0.552 |
| NZO | -0.67 | 0.066 |
| PWK | -1.526 | -0.136 |
| H37Rv_KO_CtpC | 0.238 | -0.582 |
| H37Rv_KO_CtpD | -1.39 | -0.424 |
| H37Rv_KO_Rv1272 | 1.093 | -0.377 |
| H37Rv_KO_SugABC | -1.163 | -0.052 |
| H37Rv_KO_MbtN | 1.269 | -1.769 |
| Trans05 | -1.017 | 1.141 |
| macrophage_unactivated | 0.0 | -1.07 |
| IL1 | 0.0 | -0.418 |
| Rapamycin | -1.697 | -2.771 |
| Tcell | 0.0 | -0.834 |
| GMCSF | 0.486 | -0.895 |
| IFNab | -0.877 | -1.288 |
| IFNg | 2.758 | -0.476 |
| IFNg_GMCSF1 | 1.254 | -1.2 |
| Rv1432_day32 | 0.18 | 0.51 |
| Rv1565c_day32 | -0.218 | 0.0 |
| secA2_input | 0.121 | 0.232 |
| delta_Rv3594 | -1.881 | 0.054 |
| delta_Rv3717 | -0.766 | 0.0 |
| delta_Rv3811 | -0.515 | 1.117 |
| delta_Rv0954 | -0.526 | 1.337 |
| PonA1 | 0.772 | -0.824 |
| EccD1_KO | -2.654 | 0.21 |
| EspI_KO | -0.485 | 0.183 |
| PE35_KO | -0.204 | 0.187 |
| PPE68_KO | -0.074 | 0.304 |
| glycerol2 | -2.33 | -1.033 |
| lignocerate | -2.288 | -1.728 |
| oleate | -0.553 | -0.109 |
| phosphatidylcholine | -1.625 | -0.947 |
| acetate | -2.452 | -2.853 |
| glucAc | -3.629 | -3.643 |
| Rv0950ko | -0.078 | -0.223 |
| Rv1096ko | 0.075 | 0.971 |
| Rv3684ko | 0.835 | -0.121 |
| delta_otsA_trehalose | -0.489 | 0.858 |