Top 10 genes with highest correlation to Rv3910/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0037c/- | (cc=0.5806) | info on Rv0037c/- |
| Rv3484/cpsA | (cc=0.5335) | info on Rv3484/cpsA |
| Rv1333/- | (cc=0.5267) | info on Rv1333/- |
| Rv1337/- | (cc=0.4882) | info on Rv1337/- |
| Rv1336/cysM | (cc=0.4857) | info on Rv1336/cysM |
| Rv3779/- | (cc=0.4839) | info on Rv3779/- |
| Rv2197c/- | (cc=0.4799) | info on Rv2197c/- |
| Rv1640c/lysX | (cc=0.4719) | info on Rv1640c/lysX |
| Rv1886c/fbpB | (cc=0.4717) | info on Rv1886c/fbpB |
| Rv1244/lpqZ | (cc=0.4515) | info on Rv1244/lpqZ |
Correlation of Rv3910/- with Rv1640c/lysX
Normalized LFCs for Rv3910/-:
(description and provenance of datasets)
| Rv3910/- | Rv1640c/lysX | |
| Fe_supp_jason_reseq | 1.358 | 0.77 |
| low_pH_jason_reseq | 0.333 | -1.434 |
| NO_jason_reseq | 0.0 | -0.058 |
| B6_jason_reseq | -0.256 | 1.258 |
| MHCII_jason_reseq | 0.519 | 0.159 |
| Isoniazid02 | -1.263 | -1.263 |
| Rifampicin4 | -1.329 | -3.187 |
| Ethambutol3 | -3.283 | -2.24 |
| Meropenem3 | -2.064 | 0.879 |
| Vancomycin16 | -1.541 | -2.303 |
| Rv2680_day32 | 1.157 | 1.078 |
| H37Rv_KO_MarP | 3.066 | -2.764 |
| hypoxia_3wks | 3.098 | 4.366 |
| hypoxia_6wks | 2.57 | 3.111 |
| glycerol | -1.865 | -0.42 |
| cholesterol | -0.497 | -0.564 |
| AJ | -2.143 | -1.642 |
| Bibs02 | -1.109 | -0.498 |
| Bibs02c | -1.32 | 0.899 |
| BL6 | -0.187 | 0.906 |
| BL6a | -1.462 | 1.69 |
| BXD01 | 0.088 | 2.01 |
| BXD010 | -0.151 | 1.596 |
| BXD011 | 0.733 | 1.594 |
| BXD03 | -1.078 | 0.98 |
| BXD04 | -0.035 | 1.294 |
| BXD05 | -0.657 | 1.265 |
| BXD06 | -0.484 | 1.635 |
| BXD07 | -0.805 | 1.674 |
| BXD08 | -0.31 | 2.286 |
| BXD09 | -0.596 | 2.565 |
| CAST | -2.743 | -2.147 |
| CCcont | 0.598 | 1.12 |
| DS01 | -3.027 | 0.195 |
| DS02 | -2.59 | 0.247 |
| DS04 | -1.432 | 0.854 |
| DS0c | -1.541 | -0.115 |
| GP01 | 0.874 | 1.087 |
| GP02 | -0.085 | 1.427 |
| GP0c | 1.642 | 1.205 |
| NOD | -2.312 | -1.515 |
| NZO | -1.91 | -0.932 |
| PWK | -2.252 | -1.829 |
| H37Rv_KO_CtpC | -0.59 | 1.204 |
| H37Rv_KO_CtpD | 0.166 | 0.694 |
| H37Rv_KO_Rv1272 | -0.484 | 1.286 |
| H37Rv_KO_SugABC | 0.765 | 1.294 |
| H37Rv_KO_MbtN | 1.653 | 2.599 |
| Trans05 | -0.217 | 1.806 |
| macrophage_unactivated | -0.994 | -2.358 |
| IL1 | -0.044 | -1.465 |
| Rapamycin | -0.046 | -1.645 |
| Tcell | 0.238 | -1.147 |
| GMCSF | -0.459 | -1.719 |
| IFNab | 0.856 | -0.293 |
| IFNg | -0.556 | -0.919 |
| IFNg_GMCSF1 | -1.046 | -2.077 |
| Rv1432_day32 | 0.0 | 2.379 |
| Rv1565c_day32 | 0.0 | -2.854 |
| secA2_input | -0.412 | 0.864 |
| delta_Rv3594 | 0.269 | 1.628 |
| delta_Rv3717 | 1.252 | 3.157 |
| delta_Rv3811 | 0.84 | 1.46 |
| delta_Rv0954 | 0.642 | -0.261 |
| PonA1 | -4.027 | -0.856 |
| EccD1_KO | -1.677 | -1.332 |
| EspI_KO | -1.68 | -1.557 |
| PE35_KO | -2.491 | -2.15 |
| PPE68_KO | -0.982 | -1.296 |
| glycerol2 | -1.006 | -0.744 |
| lignocerate | -1.118 | -1.006 |
| oleate | -1.154 | -2.925 |
| phosphatidylcholine | -1.361 | -1.678 |
| acetate | 0.389 | 0.271 |
| glucAc | -0.362 | 0.236 |
| Rv0950ko | 0.0 | -1.128 |
| Rv1096ko | -1.034 | 0.093 |
| Rv3684ko | 0.262 | 1.055 |
| delta_otsA_trehalose | 0.36 | -0.468 |