Top 10 genes with highest correlation to Rv3910/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0037c/- | (cc=0.5806) | info on Rv0037c/- |
| Rv3484/cpsA | (cc=0.5335) | info on Rv3484/cpsA |
| Rv1333/- | (cc=0.5267) | info on Rv1333/- |
| Rv1337/- | (cc=0.4882) | info on Rv1337/- |
| Rv1336/cysM | (cc=0.4857) | info on Rv1336/cysM |
| Rv3779/- | (cc=0.4839) | info on Rv3779/- |
| Rv2197c/- | (cc=0.4799) | info on Rv2197c/- |
| Rv1640c/lysX | (cc=0.4719) | info on Rv1640c/lysX |
| Rv1886c/fbpB | (cc=0.4717) | info on Rv1886c/fbpB |
| Rv1244/lpqZ | (cc=0.4515) | info on Rv1244/lpqZ |
Correlation of Rv3910/- with Rv1333/-
Normalized LFCs for Rv3910/-:
(description and provenance of datasets)
| Rv3910/- | Rv1333/- | |
| Fe_supp_jason_reseq | 1.358 | 0.259 |
| low_pH_jason_reseq | 0.333 | 0.161 |
| NO_jason_reseq | 0.0 | 0.819 |
| B6_jason_reseq | -0.256 | -0.371 |
| MHCII_jason_reseq | 0.519 | 0.363 |
| Isoniazid02 | -1.263 | -0.631 |
| Rifampicin4 | -1.329 | 1.032 |
| Ethambutol3 | -3.283 | -1.364 |
| Meropenem3 | -2.064 | -0.654 |
| Vancomycin16 | -1.541 | 0.531 |
| Rv2680_day32 | 1.157 | 0.36 |
| H37Rv_KO_MarP | 3.066 | -0.557 |
| hypoxia_3wks | 3.098 | 0.941 |
| hypoxia_6wks | 2.57 | 1.351 |
| glycerol | -1.865 | -0.718 |
| cholesterol | -0.497 | 0.574 |
| AJ | -2.143 | -1.375 |
| Bibs02 | -1.109 | -0.898 |
| Bibs02c | -1.32 | -0.153 |
| BL6 | -0.187 | 0.9 |
| BL6a | -1.462 | 0.865 |
| BXD01 | 0.088 | 1.833 |
| BXD010 | -0.151 | 1.317 |
| BXD011 | 0.733 | 1.36 |
| BXD03 | -1.078 | 1.786 |
| BXD04 | -0.035 | 1.307 |
| BXD05 | -0.657 | 1.887 |
| BXD06 | -0.484 | 1.352 |
| BXD07 | -0.805 | 1.468 |
| BXD08 | -0.31 | 1.477 |
| BXD09 | -0.596 | 1.215 |
| CAST | -2.743 | -1.094 |
| CCcont | 0.598 | 1.089 |
| DS01 | -3.027 | -0.775 |
| DS02 | -2.59 | -0.654 |
| DS04 | -1.432 | -0.121 |
| DS0c | -1.541 | -0.624 |
| GP01 | 0.874 | 1.29 |
| GP02 | -0.085 | 0.762 |
| GP0c | 1.642 | 1.388 |
| NOD | -2.312 | -1.865 |
| NZO | -1.91 | -0.189 |
| PWK | -2.252 | -0.871 |
| H37Rv_KO_CtpC | -0.59 | -0.578 |
| H37Rv_KO_CtpD | 0.166 | 0.336 |
| H37Rv_KO_Rv1272 | -0.484 | 1.244 |
| H37Rv_KO_SugABC | 0.765 | 1.968 |
| H37Rv_KO_MbtN | 1.653 | 1.498 |
| Trans05 | -0.217 | 0.051 |
| macrophage_unactivated | -0.994 | -0.492 |
| IL1 | -0.044 | 0.596 |
| Rapamycin | -0.046 | 0.853 |
| Tcell | 0.238 | 0.688 |
| GMCSF | -0.459 | -0.565 |
| IFNab | 0.856 | 0.441 |
| IFNg | -0.556 | 0.334 |
| IFNg_GMCSF1 | -1.046 | 0.157 |
| Rv1432_day32 | 0.0 | 0.595 |
| Rv1565c_day32 | 0.0 | -0.753 |
| secA2_input | -0.412 | 0.083 |
| delta_Rv3594 | 0.269 | 0.971 |
| delta_Rv3717 | 1.252 | 1.592 |
| delta_Rv3811 | 0.84 | 0.708 |
| delta_Rv0954 | 0.642 | -0.548 |
| PonA1 | -4.027 | -0.517 |
| EccD1_KO | -1.677 | -0.895 |
| EspI_KO | -1.68 | -0.804 |
| PE35_KO | -2.491 | -1.304 |
| PPE68_KO | -0.982 | -0.969 |
| glycerol2 | -1.006 | -0.184 |
| lignocerate | -1.118 | -0.728 |
| oleate | -1.154 | 2.294 |
| phosphatidylcholine | -1.361 | -0.541 |
| acetate | 0.389 | -0.288 |
| glucAc | -0.362 | 0.446 |
| Rv0950ko | 0.0 | -0.413 |
| Rv1096ko | -1.034 | 0.054 |
| Rv3684ko | 0.262 | -0.481 |
| delta_otsA_trehalose | 0.36 | 0.747 |