Top 10 genes with highest correlation to Rv3908/mutT4:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3874/esxB | (cc=0.5933) | info on Rv3874/esxB |
| Rv3551/- | (cc=0.5435) | info on Rv3551/- |
| Rv1244/lpqZ | (cc=0.5428) | info on Rv1244/lpqZ |
| Rv3484/cpsA | (cc=0.5406) | info on Rv3484/cpsA |
| Rv3616c/espA | (cc=0.5211) | info on Rv3616c/espA |
| Rv1822/pgsA2 | (cc=0.5174) | info on Rv1822/pgsA2 |
| Rv1184c/- | (cc=0.511) | info on Rv1184c/- |
| Rv0570/nrdZ | (cc=0.5102) | info on Rv0570/nrdZ |
| Rv3883c/mycP1 | (cc=0.5088) | info on Rv3883c/mycP1 |
| Rv3870/eccCa1 | (cc=0.5015) | info on Rv3870/eccCa1 |
Correlation of Rv3908/mutT4 with Rv3551/-
Normalized LFCs for Rv3908/mutT4:
(description and provenance of datasets)
| Rv3908/mutT4 | Rv3551/- | |
| Fe_supp_jason_reseq | 0.974 | 0.737 |
| low_pH_jason_reseq | -1.517 | -0.647 |
| NO_jason_reseq | 1.334 | -0.601 |
| B6_jason_reseq | 2.228 | -1.96 |
| MHCII_jason_reseq | 1.939 | -1.726 |
| Isoniazid02 | 0.0 | -0.842 |
| Rifampicin4 | -2.323 | -0.165 |
| Ethambutol3 | -0.652 | -1.515 |
| Meropenem3 | -0.924 | 0.734 |
| Vancomycin16 | -1.825 | -1.008 |
| Rv2680_day32 | 1.681 | -1.788 |
| H37Rv_KO_MarP | -0.128 | 0.246 |
| hypoxia_3wks | 2.404 | 0.08 |
| hypoxia_6wks | 3.18 | -0.693 |
| glycerol | -0.405 | 1.148 |
| cholesterol | 0.803 | -3.657 |
| AJ | -2.361 | -5.857 |
| Bibs02 | -1.04 | -4.616 |
| Bibs02c | -1.087 | -5.282 |
| BL6 | -0.455 | -2.92 |
| BL6a | -1.798 | -5.001 |
| BXD01 | -1.734 | -3.288 |
| BXD010 | -3.111 | -2.306 |
| BXD011 | -1.481 | -2.59 |
| BXD03 | -1.376 | -3.28 |
| BXD04 | -1.584 | -2.999 |
| BXD05 | -0.765 | -3.029 |
| BXD06 | -0.233 | -3.37 |
| BXD07 | -2.309 | -3.496 |
| BXD08 | -2.481 | -3.226 |
| BXD09 | -1.665 | -3.408 |
| CAST | -2.836 | -4.838 |
| CCcont | -1.671 | -0.733 |
| DS01 | -2.746 | -5.963 |
| DS02 | -1.624 | -5.49 |
| DS04 | -2.344 | -4.367 |
| DS0c | -1.587 | -5.476 |
| GP01 | -1.8 | -2.304 |
| GP02 | -0.785 | -1.942 |
| GP0c | -0.284 | -1.016 |
| NOD | -2.612 | -1.847 |
| NZO | -1.81 | -4.838 |
| PWK | 0.205 | -4.757 |
| H37Rv_KO_CtpC | -1.653 | -3.94 |
| H37Rv_KO_CtpD | -3.174 | -2.576 |
| H37Rv_KO_Rv1272 | -0.951 | -3.56 |
| H37Rv_KO_SugABC | 0.456 | -1.783 |
| H37Rv_KO_MbtN | 0.404 | -1.855 |
| Trans05 | 0.145 | -3.299 |
| macrophage_unactivated | 0.076 | 0.66 |
| IL1 | 0.955 | -1.605 |
| Rapamycin | 0.215 | -1.093 |
| Tcell | -0.078 | -2.209 |
| GMCSF | 0.246 | 0.752 |
| IFNab | -0.707 | 2.283 |
| IFNg | -1.195 | -0.249 |
| IFNg_GMCSF1 | -0.075 | -0.606 |
| Rv1432_day32 | 0.0 | -3.863 |
| Rv1565c_day32 | -0.351 | -3.884 |
| secA2_input | -0.538 | -0.54 |
| delta_Rv3594 | 1.797 | -0.26 |
| delta_Rv3717 | 3.121 | 0.191 |
| delta_Rv3811 | 2.678 | 0.556 |
| delta_Rv0954 | 0.695 | 1.149 |
| PonA1 | -1.101 | 0.384 |
| EccD1_KO | 0.76 | 1.246 |
| EspI_KO | -0.277 | 0.539 |
| PE35_KO | -0.283 | 1.105 |
| PPE68_KO | 1.069 | 1.139 |
| glycerol2 | 0.902 | 0.289 |
| lignocerate | 2.322 | 0.785 |
| oleate | -0.961 | -0.537 |
| phosphatidylcholine | 0.347 | -0.106 |
| acetate | 3.004 | 2.234 |
| glucAc | 2.09 | 1.052 |
| Rv0950ko | 0.482 | 1.903 |
| Rv1096ko | 1.315 | 0.329 |
| Rv3684ko | 0.269 | 0.092 |
| delta_otsA_trehalose | -0.768 | 0.325 |