Top 10 genes with highest correlation to Rv3908/mutT4:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3874/esxB | (cc=0.5933) | info on Rv3874/esxB |
| Rv3551/- | (cc=0.5435) | info on Rv3551/- |
| Rv1244/lpqZ | (cc=0.5428) | info on Rv1244/lpqZ |
| Rv3484/cpsA | (cc=0.5406) | info on Rv3484/cpsA |
| Rv3616c/espA | (cc=0.5211) | info on Rv3616c/espA |
| Rv1822/pgsA2 | (cc=0.5174) | info on Rv1822/pgsA2 |
| Rv1184c/- | (cc=0.511) | info on Rv1184c/- |
| Rv0570/nrdZ | (cc=0.5102) | info on Rv0570/nrdZ |
| Rv3883c/mycP1 | (cc=0.5088) | info on Rv3883c/mycP1 |
| Rv3870/eccCa1 | (cc=0.5015) | info on Rv3870/eccCa1 |
Correlation of Rv3908/mutT4 with Rv3874/esxB
Normalized LFCs for Rv3908/mutT4:
(description and provenance of datasets)
| Rv3908/mutT4 | Rv3874/esxB | |
| Fe_supp_jason_reseq | 0.974 | 2.171 |
| low_pH_jason_reseq | -1.517 | 0.895 |
| NO_jason_reseq | 1.334 | 2.221 |
| B6_jason_reseq | 2.228 | -1.502 |
| MHCII_jason_reseq | 1.939 | -0.667 |
| Isoniazid02 | 0.0 | -0.348 |
| Rifampicin4 | -2.323 | -0.847 |
| Ethambutol3 | -0.652 | -0.075 |
| Meropenem3 | -0.924 | 0.043 |
| Vancomycin16 | -1.825 | -0.634 |
| Rv2680_day32 | 1.681 | -1.662 |
| H37Rv_KO_MarP | -0.128 | -0.052 |
| hypoxia_3wks | 2.404 | 1.073 |
| hypoxia_6wks | 3.18 | 1.09 |
| glycerol | -0.405 | 0.162 |
| cholesterol | 0.803 | 0.033 |
| AJ | -2.361 | -4.809 |
| Bibs02 | -1.04 | -5.016 |
| Bibs02c | -1.087 | -3.265 |
| BL6 | -0.455 | -2.901 |
| BL6a | -1.798 | -3.801 |
| BXD01 | -1.734 | -2.221 |
| BXD010 | -3.111 | -3.513 |
| BXD011 | -1.481 | -2.712 |
| BXD03 | -1.376 | -3.452 |
| BXD04 | -1.584 | -2.497 |
| BXD05 | -0.765 | -2.1 |
| BXD06 | -0.233 | -3.096 |
| BXD07 | -2.309 | -3.535 |
| BXD08 | -2.481 | -3.649 |
| BXD09 | -1.665 | -3.587 |
| CAST | -2.836 | -5.342 |
| CCcont | -1.671 | -0.34 |
| DS01 | -2.746 | -3.119 |
| DS02 | -1.624 | -1.747 |
| DS04 | -2.344 | -3.384 |
| DS0c | -1.587 | -4.885 |
| GP01 | -1.8 | -2.438 |
| GP02 | -0.785 | -2.283 |
| GP0c | -0.284 | -1.553 |
| NOD | -2.612 | -4.107 |
| NZO | -1.81 | -5.092 |
| PWK | 0.205 | -4.691 |
| H37Rv_KO_CtpC | -1.653 | -1.903 |
| H37Rv_KO_CtpD | -3.174 | 0.458 |
| H37Rv_KO_Rv1272 | -0.951 | -1.826 |
| H37Rv_KO_SugABC | 0.456 | -0.313 |
| H37Rv_KO_MbtN | 0.404 | -1.541 |
| Trans05 | 0.145 | -1.797 |
| macrophage_unactivated | 0.076 | -2.456 |
| IL1 | 0.955 | -2.308 |
| Rapamycin | 0.215 | 0.353 |
| Tcell | -0.078 | -2.792 |
| GMCSF | 0.246 | -1.486 |
| IFNab | -0.707 | 0.133 |
| IFNg | -1.195 | -1.446 |
| IFNg_GMCSF1 | -0.075 | -2.13 |
| Rv1432_day32 | 0.0 | -2.542 |
| Rv1565c_day32 | -0.351 | -2.402 |
| secA2_input | -0.538 | 0.407 |
| delta_Rv3594 | 1.797 | -0.84 |
| delta_Rv3717 | 3.121 | -0.651 |
| delta_Rv3811 | 2.678 | -0.816 |
| delta_Rv0954 | 0.695 | -0.499 |
| PonA1 | -1.101 | -2.116 |
| EccD1_KO | 0.76 | -0.533 |
| EspI_KO | -0.277 | -2.564 |
| PE35_KO | -0.283 | -1.861 |
| PPE68_KO | 1.069 | -1.939 |
| glycerol2 | 0.902 | 1.304 |
| lignocerate | 2.322 | 2.087 |
| oleate | -0.961 | -1.418 |
| phosphatidylcholine | 0.347 | 1.611 |
| acetate | 3.004 | 2.635 |
| glucAc | 2.09 | 2.324 |
| Rv0950ko | 0.482 | 0.398 |
| Rv1096ko | 1.315 | 0.736 |
| Rv3684ko | 0.269 | 0.291 |
| delta_otsA_trehalose | -0.768 | -0.079 |