Top 10 genes with highest correlation to Rv3850/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3438/- | (cc=0.5835) | info on Rv3438/- |
| Rv3855/ethR | (cc=0.5678) | info on Rv3855/ethR |
| Rv2894c/xerC | (cc=0.5028) | info on Rv2894c/xerC |
| Rv1908c/katG | (cc=0.5) | info on Rv1908c/katG |
| Rv2973c/recG | (cc=0.4844) | info on Rv2973c/recG |
| Rv1420/uvrC | (cc=0.4747) | info on Rv1420/uvrC |
| Rv3489/- | (cc=0.4625) | info on Rv3489/- |
| Rv0989c/grcC2 | (cc=0.452) | info on Rv0989c/grcC2 |
| Rv3193c/- | (cc=0.4497) | info on Rv3193c/- |
| Rv3455c/truA | (cc=0.4486) | info on Rv3455c/truA |
Correlation of Rv3850/- with Rv2973c/recG
Normalized LFCs for Rv3850/-:
(description and provenance of datasets)
| Rv3850/- | Rv2973c/recG | |
| Fe_supp_jason_reseq | 0.167 | 1.077 |
| low_pH_jason_reseq | 1.069 | -0.156 |
| NO_jason_reseq | -1.62 | 0.155 |
| B6_jason_reseq | 0.983 | 1.006 |
| MHCII_jason_reseq | -1.168 | 0.427 |
| Isoniazid02 | -1.048 | -0.031 |
| Rifampicin4 | 0.701 | 0.165 |
| Ethambutol3 | -0.13 | 0.536 |
| Meropenem3 | -1.198 | 0.253 |
| Vancomycin16 | 2.141 | -0.284 |
| Rv2680_day32 | 1.608 | 0.228 |
| H37Rv_KO_MarP | -0.516 | -0.285 |
| hypoxia_3wks | -1.26 | -0.443 |
| hypoxia_6wks | -1.662 | -0.549 |
| glycerol | -0.353 | 0.642 |
| cholesterol | 0.331 | 0.852 |
| AJ | 0.452 | -0.225 |
| Bibs02 | 0.568 | 0.201 |
| Bibs02c | -0.611 | 0.555 |
| BL6 | 1.319 | 0.702 |
| BL6a | 0.273 | 0.63 |
| BXD01 | -0.207 | 0.248 |
| BXD010 | -0.286 | 0.429 |
| BXD011 | -0.592 | 0.315 |
| BXD03 | 0.524 | 0.604 |
| BXD04 | -0.255 | 0.136 |
| BXD05 | -0.112 | 0.283 |
| BXD06 | 0.12 | 0.202 |
| BXD07 | -0.096 | 0.317 |
| BXD08 | 0.087 | 0.353 |
| BXD09 | 0.177 | 0.494 |
| CAST | 0.03 | -0.407 |
| CCcont | 0.902 | 1.099 |
| DS01 | -0.69 | 1.194 |
| DS02 | -0.878 | 1.601 |
| DS04 | -0.278 | 0.838 |
| DS0c | 1.051 | 0.69 |
| GP01 | -0.919 | -1.067 |
| GP02 | -0.891 | 0.092 |
| GP0c | 0.149 | -0.507 |
| NOD | -1.189 | 0.384 |
| NZO | -1.101 | 0.178 |
| PWK | 0.705 | 0.216 |
| H37Rv_KO_CtpC | -1.41 | -0.475 |
| H37Rv_KO_CtpD | 1.531 | 0.192 |
| H37Rv_KO_Rv1272 | 0.598 | 0.811 |
| H37Rv_KO_SugABC | -1.358 | 0.729 |
| H37Rv_KO_MbtN | 0.499 | -0.075 |
| Trans05 | 0.955 | 0.584 |
| macrophage_unactivated | -1.054 | -0.092 |
| IL1 | -0.389 | -0.848 |
| Rapamycin | -1.025 | -0.773 |
| Tcell | -0.156 | -0.71 |
| GMCSF | -0.214 | 0.0 |
| IFNab | 0.535 | 0.493 |
| IFNg | 0.893 | 0.639 |
| IFNg_GMCSF1 | -0.151 | -0.28 |
| Rv1432_day32 | -1.048 | 0.621 |
| Rv1565c_day32 | 0.813 | -0.142 |
| secA2_input | -0.531 | -0.276 |
| delta_Rv3594 | -0.109 | 0.106 |
| delta_Rv3717 | -0.732 | -0.045 |
| delta_Rv3811 | 0.474 | 0.338 |
| delta_Rv0954 | -1.231 | -0.678 |
| PonA1 | 0.107 | 0.155 |
| EccD1_KO | -2.115 | -0.753 |
| EspI_KO | -0.359 | 0.416 |
| PE35_KO | 0.201 | 0.111 |
| PPE68_KO | -0.902 | 0.522 |
| glycerol2 | -2.645 | -1.595 |
| lignocerate | -1.978 | -1.218 |
| oleate | -2.677 | -1.613 |
| phosphatidylcholine | -2.451 | -1.401 |
| acetate | -0.504 | -0.229 |
| glucAc | -0.216 | 0.392 |
| Rv0950ko | 0.305 | 0.154 |
| Rv1096ko | 0.682 | 0.76 |
| Rv3684ko | -0.878 | 0.632 |
| delta_otsA_trehalose | -0.843 | 0.408 |