Top 10 genes with highest correlation to Rv3850/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3438/- | (cc=0.5835) | info on Rv3438/- |
| Rv3855/ethR | (cc=0.5678) | info on Rv3855/ethR |
| Rv2894c/xerC | (cc=0.5028) | info on Rv2894c/xerC |
| Rv1908c/katG | (cc=0.5) | info on Rv1908c/katG |
| Rv2973c/recG | (cc=0.4844) | info on Rv2973c/recG |
| Rv1420/uvrC | (cc=0.4747) | info on Rv1420/uvrC |
| Rv3489/- | (cc=0.4625) | info on Rv3489/- |
| Rv0989c/grcC2 | (cc=0.452) | info on Rv0989c/grcC2 |
| Rv3193c/- | (cc=0.4497) | info on Rv3193c/- |
| Rv3455c/truA | (cc=0.4486) | info on Rv3455c/truA |
Correlation of Rv3850/- with Rv1908c/katG
Normalized LFCs for Rv3850/-:
(description and provenance of datasets)
| Rv3850/- | Rv1908c/katG | |
| Fe_supp_jason_reseq | 0.167 | 2.303 |
| low_pH_jason_reseq | 1.069 | -0.44 |
| NO_jason_reseq | -1.62 | -0.69 |
| B6_jason_reseq | 0.983 | -0.292 |
| MHCII_jason_reseq | -1.168 | -0.257 |
| Isoniazid02 | -1.048 | 0.0 |
| Rifampicin4 | 0.701 | 0.0 |
| Ethambutol3 | -0.13 | 0.0 |
| Meropenem3 | -1.198 | 0.0 |
| Vancomycin16 | 2.141 | 0.0 |
| Rv2680_day32 | 1.608 | 0.0 |
| H37Rv_KO_MarP | -0.516 | -1.722 |
| hypoxia_3wks | -1.26 | -0.977 |
| hypoxia_6wks | -1.662 | -2.714 |
| glycerol | -0.353 | 0.0 |
| cholesterol | 0.331 | 0.0 |
| AJ | 0.452 | 0.0 |
| Bibs02 | 0.568 | 0.0 |
| Bibs02c | -0.611 | 0.0 |
| BL6 | 1.319 | 0.238 |
| BL6a | 0.273 | 0.544 |
| BXD01 | -0.207 | 0.248 |
| BXD010 | -0.286 | 0.0 |
| BXD011 | -0.592 | 0.854 |
| BXD03 | 0.524 | 0.0 |
| BXD04 | -0.255 | 0.34 |
| BXD05 | -0.112 | 0.661 |
| BXD06 | 0.12 | 0.469 |
| BXD07 | -0.096 | 0.0 |
| BXD08 | 0.087 | 0.365 |
| BXD09 | 0.177 | 0.69 |
| CAST | 0.03 | 0.0 |
| CCcont | 0.902 | 3.165 |
| DS01 | -0.69 | 0.0 |
| DS02 | -0.878 | 0.0 |
| DS04 | -0.278 | 0.953 |
| DS0c | 1.051 | 0.0 |
| GP01 | -0.919 | 0.0 |
| GP02 | -0.891 | 0.0 |
| GP0c | 0.149 | 0.0 |
| NOD | -1.189 | 0.0 |
| NZO | -1.101 | 0.0 |
| PWK | 0.705 | 0.0 |
| H37Rv_KO_CtpC | -1.41 | 0.446 |
| H37Rv_KO_CtpD | 1.531 | 0.703 |
| H37Rv_KO_Rv1272 | 0.598 | 0.141 |
| H37Rv_KO_SugABC | -1.358 | 0.42 |
| H37Rv_KO_MbtN | 0.499 | 2.414 |
| Trans05 | 0.955 | 0.359 |
| macrophage_unactivated | -1.054 | 0.0 |
| IL1 | -0.389 | 0.0 |
| Rapamycin | -1.025 | 0.0 |
| Tcell | -0.156 | 0.0 |
| GMCSF | -0.214 | 0.0 |
| IFNab | 0.535 | 0.417 |
| IFNg | 0.893 | 0.0 |
| IFNg_GMCSF1 | -0.151 | 0.0 |
| Rv1432_day32 | -1.048 | -0.494 |
| Rv1565c_day32 | 0.813 | 0.0 |
| secA2_input | -0.531 | 0.67 |
| delta_Rv3594 | -0.109 | 0.907 |
| delta_Rv3717 | -0.732 | 0.784 |
| delta_Rv3811 | 0.474 | 0.812 |
| delta_Rv0954 | -1.231 | 0.842 |
| PonA1 | 0.107 | -0.419 |
| EccD1_KO | -2.115 | -4.969 |
| EspI_KO | -0.359 | -4.743 |
| PE35_KO | 0.201 | 1.374 |
| PPE68_KO | -0.902 | 0.275 |
| glycerol2 | -2.645 | -3.698 |
| lignocerate | -1.978 | -2.548 |
| oleate | -2.677 | -3.077 |
| phosphatidylcholine | -2.451 | -3.546 |
| acetate | -0.504 | 0.253 |
| glucAc | -0.216 | -0.375 |
| Rv0950ko | 0.305 | -1.212 |
| Rv1096ko | 0.682 | -1.493 |
| Rv3684ko | -0.878 | -0.298 |
| delta_otsA_trehalose | -0.843 | 0.153 |