Top 10 genes with highest correlation to Rv3850/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3438/- | (cc=0.5835) | info on Rv3438/- |
| Rv3855/ethR | (cc=0.5678) | info on Rv3855/ethR |
| Rv2894c/xerC | (cc=0.5028) | info on Rv2894c/xerC |
| Rv1908c/katG | (cc=0.5) | info on Rv1908c/katG |
| Rv2973c/recG | (cc=0.4844) | info on Rv2973c/recG |
| Rv1420/uvrC | (cc=0.4747) | info on Rv1420/uvrC |
| Rv3489/- | (cc=0.4625) | info on Rv3489/- |
| Rv0989c/grcC2 | (cc=0.452) | info on Rv0989c/grcC2 |
| Rv3193c/- | (cc=0.4497) | info on Rv3193c/- |
| Rv3455c/truA | (cc=0.4486) | info on Rv3455c/truA |
Correlation of Rv3850/- with Rv3438/-
Normalized LFCs for Rv3850/-:
(description and provenance of datasets)
| Rv3850/- | Rv3438/- | |
| Fe_supp_jason_reseq | 0.167 | 1.678 |
| low_pH_jason_reseq | 1.069 | 1.215 |
| NO_jason_reseq | -1.62 | -2.084 |
| B6_jason_reseq | 0.983 | 1.845 |
| MHCII_jason_reseq | -1.168 | 0.053 |
| Isoniazid02 | -1.048 | -0.914 |
| Rifampicin4 | 0.701 | -0.236 |
| Ethambutol3 | -0.13 | -0.471 |
| Meropenem3 | -1.198 | -1.148 |
| Vancomycin16 | 2.141 | 0.324 |
| Rv2680_day32 | 1.608 | 0.593 |
| H37Rv_KO_MarP | -0.516 | -0.409 |
| hypoxia_3wks | -1.26 | -0.104 |
| hypoxia_6wks | -1.662 | -2.036 |
| glycerol | -0.353 | 0.073 |
| cholesterol | 0.331 | 1.403 |
| AJ | 0.452 | -0.222 |
| Bibs02 | 0.568 | 0.066 |
| Bibs02c | -0.611 | 0.925 |
| BL6 | 1.319 | 1.308 |
| BL6a | 0.273 | 1.706 |
| BXD01 | -0.207 | 0.622 |
| BXD010 | -0.286 | 2.112 |
| BXD011 | -0.592 | 1.087 |
| BXD03 | 0.524 | 1.843 |
| BXD04 | -0.255 | 1.397 |
| BXD05 | -0.112 | 1.159 |
| BXD06 | 0.12 | 0.917 |
| BXD07 | -0.096 | 1.269 |
| BXD08 | 0.087 | 0.696 |
| BXD09 | 0.177 | 1.069 |
| CAST | 0.03 | 1.87 |
| CCcont | 0.902 | 1.041 |
| DS01 | -0.69 | -0.476 |
| DS02 | -0.878 | -0.298 |
| DS04 | -0.278 | 0.358 |
| DS0c | 1.051 | 0.154 |
| GP01 | -0.919 | -1.608 |
| GP02 | -0.891 | -1.105 |
| GP0c | 0.149 | -0.918 |
| NOD | -1.189 | 0.737 |
| NZO | -1.101 | -0.637 |
| PWK | 0.705 | 0.45 |
| H37Rv_KO_CtpC | -1.41 | -0.061 |
| H37Rv_KO_CtpD | 1.531 | 1.161 |
| H37Rv_KO_Rv1272 | 0.598 | 0.657 |
| H37Rv_KO_SugABC | -1.358 | 0.496 |
| H37Rv_KO_MbtN | 0.499 | 0.352 |
| Trans05 | 0.955 | 0.822 |
| macrophage_unactivated | -1.054 | -0.259 |
| IL1 | -0.389 | 0.733 |
| Rapamycin | -1.025 | -0.252 |
| Tcell | -0.156 | 0.0 |
| GMCSF | -0.214 | 1.827 |
| IFNab | 0.535 | 0.233 |
| IFNg | 0.893 | 0.935 |
| IFNg_GMCSF1 | -0.151 | 1.1 |
| Rv1432_day32 | -1.048 | -1.182 |
| Rv1565c_day32 | 0.813 | 0.482 |
| secA2_input | -0.531 | 0.598 |
| delta_Rv3594 | -0.109 | -0.711 |
| delta_Rv3717 | -0.732 | -0.104 |
| delta_Rv3811 | 0.474 | -0.476 |
| delta_Rv0954 | -1.231 | 0.129 |
| PonA1 | 0.107 | 0.521 |
| EccD1_KO | -2.115 | -1.22 |
| EspI_KO | -0.359 | -0.029 |
| PE35_KO | 0.201 | 0.403 |
| PPE68_KO | -0.902 | -0.698 |
| glycerol2 | -2.645 | -0.722 |
| lignocerate | -1.978 | -0.544 |
| oleate | -2.677 | -1.874 |
| phosphatidylcholine | -2.451 | -0.923 |
| acetate | -0.504 | -0.437 |
| glucAc | -0.216 | 0.501 |
| Rv0950ko | 0.305 | 0.479 |
| Rv1096ko | 0.682 | 0.35 |
| Rv3684ko | -0.878 | -0.187 |
| delta_otsA_trehalose | -0.843 | 0.85 |