Top 10 genes with highest correlation to Rv3755c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1112/- | (cc=0.5657) | info on Rv1112/- |
| Rv1079/metB | (cc=0.5299) | info on Rv1079/metB |
| Rv3624c/hpt | (cc=0.4788) | info on Rv3624c/hpt |
| Rv1638/uvrA | (cc=0.4773) | info on Rv1638/uvrA |
| Rv0155/pntAa | (cc=0.4747) | info on Rv0155/pntAa |
| Rv3433c/- | (cc=0.472) | info on Rv3433c/- |
| Rv2222c/glnA2 | (cc=0.462) | info on Rv2222c/glnA2 |
| Rv2929/- | (cc=0.448) | info on Rv2929/- |
| Rv1173/fbiC | (cc=0.4458) | info on Rv1173/fbiC |
| Rv1196/PPE18 | (cc=0.4431) | info on Rv1196/PPE18 |
Correlation of Rv3755c/- with Rv2222c/glnA2
Normalized LFCs for Rv3755c/-:
(description and provenance of datasets)
| Rv3755c/- | Rv2222c/glnA2 | |
| Fe_supp_jason_reseq | 0.706 | 0.058 |
| low_pH_jason_reseq | -0.979 | 1.767 |
| NO_jason_reseq | -0.969 | -2.247 |
| B6_jason_reseq | -2.07 | -0.178 |
| MHCII_jason_reseq | -2.8 | -0.977 |
| Isoniazid02 | 3.111 | 1.685 |
| Rifampicin4 | -0.344 | -0.29 |
| Ethambutol3 | 0.705 | 1.916 |
| Meropenem3 | 1.452 | 0.895 |
| Vancomycin16 | 0.382 | 1.117 |
| Rv2680_day32 | -1.501 | -0.161 |
| H37Rv_KO_MarP | 1.008 | 1.421 |
| hypoxia_3wks | -1.232 | -1.216 |
| hypoxia_6wks | -1.029 | -0.819 |
| glycerol | -0.471 | 1.858 |
| cholesterol | 1.302 | 2.007 |
| AJ | 0.129 | -0.146 |
| Bibs02 | -0.034 | 0.493 |
| Bibs02c | 0.0 | 0.124 |
| BL6 | -0.384 | 0.906 |
| BL6a | 0.558 | 0.88 |
| BXD01 | 0.347 | 0.629 |
| BXD010 | 0.999 | 0.516 |
| BXD011 | -0.424 | 0.883 |
| BXD03 | 1.706 | 0.229 |
| BXD04 | 1.988 | 1.63 |
| BXD05 | -0.052 | 0.598 |
| BXD06 | 1.243 | 1.533 |
| BXD07 | 0.22 | 0.499 |
| BXD08 | 0.775 | 0.0 |
| BXD09 | 0.312 | 0.238 |
| CAST | -0.23 | -0.302 |
| CCcont | 1.48 | 2.53 |
| DS01 | 0.45 | 0.0 |
| DS02 | 0.159 | 1.215 |
| DS04 | 0.275 | 1.012 |
| DS0c | 1.53 | 1.131 |
| GP01 | -1.412 | 0.684 |
| GP02 | -1.324 | 0.224 |
| GP0c | -1.245 | 0.86 |
| NOD | -0.042 | -0.63 |
| NZO | -0.419 | 0.0 |
| PWK | 1.142 | 0.332 |
| H37Rv_KO_CtpC | 0.946 | 2.329 |
| H37Rv_KO_CtpD | 1.742 | 0.215 |
| H37Rv_KO_Rv1272 | 0.896 | 2.319 |
| H37Rv_KO_SugABC | 0.736 | 1.356 |
| H37Rv_KO_MbtN | 0.518 | 1.795 |
| Trans05 | -0.025 | 1.952 |
| macrophage_unactivated | 0.587 | -0.739 |
| IL1 | -2.367 | -1.231 |
| Rapamycin | -0.853 | -0.466 |
| Tcell | 0.857 | 1.906 |
| GMCSF | 0.048 | -0.401 |
| IFNab | -0.112 | 0.0 |
| IFNg | -1.89 | -1.109 |
| IFNg_GMCSF1 | -1.458 | -1.012 |
| Rv1432_day32 | -1.254 | 0.85 |
| Rv1565c_day32 | -1.842 | -0.616 |
| secA2_input | -1.313 | 1.72 |
| delta_Rv3594 | 0.387 | 1.144 |
| delta_Rv3717 | 0.346 | 1.333 |
| delta_Rv3811 | -0.109 | 1.325 |
| delta_Rv0954 | 0.903 | -1.833 |
| PonA1 | -0.329 | -2.51 |
| EccD1_KO | 0.572 | 0.171 |
| EspI_KO | -0.057 | -0.231 |
| PE35_KO | 0.131 | 0.604 |
| PPE68_KO | -0.064 | 0.166 |
| glycerol2 | -1.46 | 0.369 |
| lignocerate | -1.578 | 0.0 |
| oleate | -0.903 | 0.961 |
| phosphatidylcholine | -1.55 | 0.0 |
| acetate | -0.214 | 0.437 |
| glucAc | -0.168 | 0.143 |
| Rv0950ko | 0.549 | -0.084 |
| Rv1096ko | -0.362 | -0.621 |
| Rv3684ko | 0.786 | 0.786 |
| delta_otsA_trehalose | -0.952 | 0.088 |