Top 10 genes with highest correlation to Rv3657c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2656c/- | (cc=0.47) | info on Rv2656c/- |
| Rv2401/- | (cc=0.4504) | info on Rv2401/- |
| Rv2398c/cysW | (cc=0.4275) | info on Rv2398c/cysW |
| Rv0805/- | (cc=0.418) | info on Rv0805/- |
| Rv2512c/- | (cc=0.4095) | info on Rv2512c/- |
| Rv1199c/- | (cc=0.4086) | info on Rv1199c/- |
| Rv2840c/- | (cc=0.4084) | info on Rv2840c/- |
| Rv2335/cysE | (cc=0.4) | info on Rv2335/cysE |
| Rv3527/- | (cc=0.3993) | info on Rv3527/- |
| Rv2793c/truB | (cc=0.3839) | info on Rv2793c/truB |
Correlation of Rv3657c/- with Rv2398c/cysW
Normalized LFCs for Rv3657c/-:
(description and provenance of datasets)
| Rv3657c/- | Rv2398c/cysW | |
| Fe_supp_jason_reseq | -0.878 | -0.559 |
| low_pH_jason_reseq | 1.745 | 2.469 |
| NO_jason_reseq | -1.244 | -0.929 |
| B6_jason_reseq | -0.317 | 1.243 |
| MHCII_jason_reseq | -0.503 | -1.175 |
| Isoniazid02 | 0.0 | -0.627 |
| Rifampicin4 | 0.382 | -0.26 |
| Ethambutol3 | 0.86 | 0.263 |
| Meropenem3 | 0.345 | -0.593 |
| Vancomycin16 | 0.218 | 0.239 |
| Rv2680_day32 | 0.821 | 0.0 |
| H37Rv_KO_MarP | 0.471 | -1.317 |
| hypoxia_3wks | 0.0 | -0.371 |
| hypoxia_6wks | -0.332 | 1.462 |
| glycerol | 1.752 | 0.709 |
| cholesterol | 0.859 | 0.0 |
| AJ | -0.146 | 0.637 |
| Bibs02 | -1.325 | 0.0 |
| Bibs02c | 0.0 | 0.0 |
| BL6 | -1.07 | 0.125 |
| BL6a | 0.284 | 0.696 |
| BXD01 | -0.264 | 2.505 |
| BXD010 | 1.332 | 0.543 |
| BXD011 | -0.123 | 0.243 |
| BXD03 | 1.226 | 1.687 |
| BXD04 | 0.933 | 2.08 |
| BXD05 | 1.055 | 1.109 |
| BXD06 | 0.422 | 1.898 |
| BXD07 | 1.065 | 1.003 |
| BXD08 | 0.358 | 3.201 |
| BXD09 | 0.733 | 0.943 |
| CAST | 0.976 | 2.563 |
| CCcont | -1.278 | 0.829 |
| DS01 | 0.799 | 0.0 |
| DS02 | 1.972 | 0.0 |
| DS04 | 1.012 | 0.0 |
| DS0c | 0.479 | 0.596 |
| GP01 | -1.164 | 0.0 |
| GP02 | -1.064 | 0.0 |
| GP0c | -0.082 | 0.248 |
| NOD | 0.0 | 1.507 |
| NZO | 0.63 | 0.199 |
| PWK | 0.706 | 0.196 |
| H37Rv_KO_CtpC | -0.213 | 0.309 |
| H37Rv_KO_CtpD | 0.0 | 0.241 |
| H37Rv_KO_Rv1272 | 1.146 | 0.0 |
| H37Rv_KO_SugABC | 0.03 | 0.099 |
| H37Rv_KO_MbtN | -0.747 | 0.633 |
| Trans05 | 0.752 | 3.198 |
| macrophage_unactivated | -1.051 | -0.761 |
| IL1 | -0.608 | -1.124 |
| Rapamycin | -0.555 | -0.74 |
| Tcell | -0.358 | -0.785 |
| GMCSF | 0.217 | -1.001 |
| IFNab | 0.816 | 0.623 |
| IFNg | -0.294 | -1.013 |
| IFNg_GMCSF1 | -0.204 | -0.757 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | -0.58 | 0.0 |
| secA2_input | 1.171 | -2.027 |
| delta_Rv3594 | -0.954 | -1.689 |
| delta_Rv3717 | -0.101 | -2.648 |
| delta_Rv3811 | -1.115 | -4.054 |
| delta_Rv0954 | -1.622 | -1.902 |
| PonA1 | 0.088 | -2.428 |
| EccD1_KO | 0.365 | -3.147 |
| EspI_KO | -0.083 | -3.246 |
| PE35_KO | 0.085 | 2.374 |
| PPE68_KO | 2.054 | 0.653 |
| glycerol2 | -1.188 | -2.028 |
| lignocerate | -0.442 | -1.469 |
| oleate | -1.007 | -1.874 |
| phosphatidylcholine | -0.819 | -1.689 |
| acetate | 0.788 | -0.637 |
| glucAc | -0.877 | -1.034 |
| Rv0950ko | -0.193 | -2.527 |
| Rv1096ko | -0.947 | -1.915 |
| Rv3684ko | -1.428 | -1.955 |
| delta_otsA_trehalose | 0.214 | 1.3 |