TnSeqCorr

Top 10 genes with highest correlation to Rv3556c/fadA6:

update plotcorrelationlink to info on gene
Rv3544c/fadE28 (cc=0.8239) info on Rv3544c/fadE28
Rv3502c/- (cc=0.8119) info on Rv3502c/-
Rv3542c/- (cc=0.7772) info on Rv3542c/-
Rv3551/- (cc=0.7748) info on Rv3551/-
Rv3569c/hsaD (cc=0.7685) info on Rv3569c/hsaD
Rv3870/eccCa1 (cc=0.7445) info on Rv3870/eccCa1
Rv0485/- (cc=0.7419) info on Rv0485/-
Rv1568/bioA (cc=0.7338) info on Rv1568/bioA
Rv3871/eccCb1 (cc=0.7184) info on Rv3871/eccCb1
Rv3552/- (cc=0.7122) info on Rv3552/-

Correlation of Rv3556c/fadA6 with Rv0485/-

Normalized LFCs for Rv3556c/fadA6:
(description and provenance of datasets)
Rv3556c/fadA6Rv0485/-
Fe_supp_jason_reseq

-1.066

-0.56

low_pH_jason_reseq

0.785

-1.026

NO_jason_reseq

-0.94

-2.242

B6_jason_reseq

-2.783

-4.618

MHCII_jason_reseq

-2.743

-3.592

Isoniazid02

-2.357

-0.454

Rifampicin4

0.252

-0.393

Ethambutol3

-2.213

0.181

Meropenem3

-1.137

-1.181

Vancomycin16

-0.708

-0.557

Rv2680_day32

-3.017

-3.166

H37Rv_KO_MarP

0.485

0.24

hypoxia_3wks

0.359

0.159

hypoxia_6wks

-0.065

-0.722

glycerol

0.063

-0.413

cholesterol

-2.856

-3.975

AJ

-3.15

-4.686

Bibs02

-3.606

-3.876

Bibs02c

-3.24

-3.778

BL6

-2.467

-3.118

BL6a

-3.709

-4.417

BXD01

-1.929

-3.065

BXD010

-2.525

-3.013

BXD011

-1.589

-2.635

BXD03

-2.666

-3.015

BXD04

-1.679

-2.757

BXD05

-1.993

-2.718

BXD06

-2.5

-3.542

BXD07

-2.145

-3.674

BXD08

-1.969

-3.219

BXD09

-2.176

-3.306

CAST

-3.265

-4.443

CCcont

-0.465

-0.011

DS01

-4.423

-5.006

DS02

-2.117

-2.27

DS04

-1.067

-4.112

DS0c

-3.212

-4.381

GP01

-1.529

-0.576

GP02

-1.482

-0.338

GP0c

1.107

-0.379

NOD

-3.479

-2.302

NZO

-3.553

-4.028

PWK

-3.038

-2.842

H37Rv_KO_CtpC

-2.516

-3.064

H37Rv_KO_CtpD

-1.396

-1.944

H37Rv_KO_Rv1272

-0.978

-2.297

H37Rv_KO_SugABC

-0.657

-1.715

H37Rv_KO_MbtN

-1.136

-0.775

Trans05

-2.117

-3.074

macrophage_unactivated

-0.085

0.189

IL1

-2.581

0.774

Rapamycin

-1.135

1.056

Tcell

-4.132

-1.567

GMCSF

0.834

-0.945

IFNab

2.007

0.441

IFNg

0.281

-1.403

IFNg_GMCSF1

0.167

-1.697

Rv1432_day32

-4.43

-4.519

Rv1565c_day32

-1.797

-4.547

secA2_input

-1.083

0.492

delta_Rv3594

1.055

0.032

delta_Rv3717

0.736

-0.671

delta_Rv3811

0.934

-0.064

delta_Rv0954

1.16

0.862

PonA1

1.191

0.77

EccD1_KO

-0.326

0.174

EspI_KO

-0.451

0.297

PE35_KO

-0.505

0.193

PPE68_KO

-0.857

0.042

glycerol2

-1.131

1.275

lignocerate

-0.897

0.315

oleate

0.02

-0.065

phosphatidylcholine

-0.734

0.77

acetate

-0.652

-0.043

glucAc

-1.199

-0.54

Rv0950ko

0.292

0.377

Rv1096ko

0.784

0.47

Rv3684ko

0.37

0.262

delta_otsA_trehalose

-1.662

-0.263