Top 10 genes with highest correlation to Rv3555c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3378c/- | (cc=0.5967) | info on Rv3378c/- |
| Rv3150/nuoF | (cc=0.5941) | info on Rv3150/nuoF |
| Rv3146/nuoB | (cc=0.5937) | info on Rv3146/nuoB |
| Rv2374c/hrcA | (cc=0.5909) | info on Rv2374c/hrcA |
| Rv1213/glgC | (cc=0.5852) | info on Rv1213/glgC |
| Rv1058/fadD14 | (cc=0.5803) | info on Rv1058/fadD14 |
| Rv2071c/cobM | (cc=0.571) | info on Rv2071c/cobM |
| Rv1779c/- | (cc=0.5705) | info on Rv1779c/- |
| Rv0642c/mmaA4 | (cc=0.5699) | info on Rv0642c/mmaA4 |
| Rv0928/pstS3 | (cc=0.5563) | info on Rv0928/pstS3 |
Correlation of Rv3555c/- with Rv3150/nuoF
Normalized LFCs for Rv3555c/-:
(description and provenance of datasets)
| Rv3555c/- | Rv3150/nuoF | |
| Fe_supp_jason_reseq | -1.642 | -1.514 |
| low_pH_jason_reseq | -0.427 | -0.313 |
| NO_jason_reseq | -0.158 | -0.252 |
| B6_jason_reseq | -3.052 | -1.087 |
| MHCII_jason_reseq | -0.977 | -1.509 |
| Isoniazid02 | -0.247 | 0.611 |
| Rifampicin4 | -0.523 | 0.282 |
| Ethambutol3 | -0.153 | -0.595 |
| Meropenem3 | 0.024 | -0.847 |
| Vancomycin16 | 0.0 | -0.196 |
| Rv2680_day32 | -0.916 | 0.266 |
| H37Rv_KO_MarP | 0.103 | -0.246 |
| hypoxia_3wks | -0.267 | 1.097 |
| hypoxia_6wks | -1.361 | 0.754 |
| glycerol | -0.554 | -0.471 |
| cholesterol | 0.864 | -0.216 |
| AJ | -0.297 | -0.983 |
| Bibs02 | -0.408 | 0.55 |
| Bibs02c | -1.881 | -0.23 |
| BL6 | 0.627 | 1.845 |
| BL6a | 0.785 | 2.251 |
| BXD01 | 1.705 | 1.864 |
| BXD010 | 0.278 | 2.266 |
| BXD011 | 0.87 | 2.05 |
| BXD03 | 1.032 | 2.177 |
| BXD04 | 2.404 | 2.337 |
| BXD05 | -0.056 | 2.126 |
| BXD06 | 1.189 | 2.045 |
| BXD07 | 1.662 | 2.3 |
| BXD08 | 1.208 | 2.274 |
| BXD09 | 1.228 | 2.374 |
| CAST | -1.49 | 0.506 |
| CCcont | 0.0 | 1.451 |
| DS01 | -0.197 | 0.583 |
| DS02 | -0.38 | 0.147 |
| DS04 | -0.984 | 0.426 |
| DS0c | -0.596 | 0.969 |
| GP01 | 2.544 | 0.715 |
| GP02 | 2.419 | 0.875 |
| GP0c | 2.452 | 1.092 |
| NOD | -0.392 | -0.838 |
| NZO | -1.011 | 0.38 |
| PWK | 0.61 | -0.142 |
| H37Rv_KO_CtpC | 1.632 | 1.463 |
| H37Rv_KO_CtpD | 1.273 | 2.661 |
| H37Rv_KO_Rv1272 | 0.351 | 1.929 |
| H37Rv_KO_SugABC | 0.865 | 1.426 |
| H37Rv_KO_MbtN | 0.118 | 1.537 |
| Trans05 | 1.333 | 1.798 |
| macrophage_unactivated | -1.13 | 0.284 |
| IL1 | 0.169 | 0.267 |
| Rapamycin | -0.878 | 0.365 |
| Tcell | 0.362 | 0.746 |
| GMCSF | -2.075 | 0.388 |
| IFNab | -1.312 | 1.69 |
| IFNg | -1.601 | -0.302 |
| IFNg_GMCSF1 | -1.882 | 0.145 |
| Rv1432_day32 | 0.0 | 0.568 |
| Rv1565c_day32 | 0.535 | -0.208 |
| secA2_input | -0.186 | -0.116 |
| delta_Rv3594 | -0.626 | 0.392 |
| delta_Rv3717 | -0.693 | 0.299 |
| delta_Rv3811 | -1.054 | 0.094 |
| delta_Rv0954 | -1.452 | -0.057 |
| PonA1 | -2.038 | -0.39 |
| EccD1_KO | -1.536 | -0.474 |
| EspI_KO | -0.279 | -0.177 |
| PE35_KO | -0.995 | -0.467 |
| PPE68_KO | -1.091 | 0.0 |
| glycerol2 | 0.601 | 1.866 |
| lignocerate | -0.505 | -0.192 |
| oleate | 0.425 | 2.076 |
| phosphatidylcholine | 0.482 | -0.221 |
| acetate | -0.883 | -0.263 |
| glucAc | -1.352 | 0.587 |
| Rv0950ko | -0.694 | 0.311 |
| Rv1096ko | 0.781 | 0.639 |
| Rv3684ko | 0.301 | 0.098 |
| delta_otsA_trehalose | 1.858 | 0.965 |