TnSeqCorr

Top 10 genes with highest correlation to Rv3555c/-:

update plotcorrelationlink to info on gene
Rv3378c/- (cc=0.5967) info on Rv3378c/-
Rv3150/nuoF (cc=0.5941) info on Rv3150/nuoF
Rv3146/nuoB (cc=0.5937) info on Rv3146/nuoB
Rv2374c/hrcA (cc=0.5909) info on Rv2374c/hrcA
Rv1213/glgC (cc=0.5852) info on Rv1213/glgC
Rv1058/fadD14 (cc=0.5803) info on Rv1058/fadD14
Rv2071c/cobM (cc=0.571) info on Rv2071c/cobM
Rv1779c/- (cc=0.5705) info on Rv1779c/-
Rv0642c/mmaA4 (cc=0.5699) info on Rv0642c/mmaA4
Rv0928/pstS3 (cc=0.5563) info on Rv0928/pstS3

Correlation of Rv3555c/- with Rv3378c/-

Normalized LFCs for Rv3555c/-:
(description and provenance of datasets)
Rv3555c/-Rv3378c/-
Fe_supp_jason_reseq

-1.642

0.09

low_pH_jason_reseq

-0.427

0.0

NO_jason_reseq

-0.158

0.562

B6_jason_reseq

-3.052

-1.175

MHCII_jason_reseq

-0.977

-0.922

Isoniazid02

-0.247

0.188

Rifampicin4

-0.523

-0.384

Ethambutol3

-0.153

2.745

Meropenem3

0.024

-0.111

Vancomycin16

0.0

-0.122

Rv2680_day32

-0.916

0.219

H37Rv_KO_MarP

0.103

0.346

hypoxia_3wks

-0.267

0.55

hypoxia_6wks

-1.361

0.288

glycerol

-0.554

-0.791

cholesterol

0.864

-0.435

AJ

-0.297

1.356

Bibs02

-0.408

-0.123

Bibs02c

-1.881

-0.141

BL6

0.627

0.355

BL6a

0.785

1.004

BXD01

1.705

0.81

BXD010

0.278

2.138

BXD011

0.87

0.362

BXD03

1.032

1.461

BXD04

2.404

0.855

BXD05

-0.056

0.736

BXD06

1.189

1.411

BXD07

1.662

0.702

BXD08

1.208

1.308

BXD09

1.228

1.452

CAST

-1.49

0.414

CCcont

0.0

0.497

DS01

-0.197

0.149

DS02

-0.38

0.507

DS04

-0.984

1.699

DS0c

-0.596

0.506

GP01

2.544

1.723

GP02

2.419

1.343

GP0c

2.452

0.76

NOD

-0.392

0.0

NZO

-1.011

0.465

PWK

0.61

0.995

H37Rv_KO_CtpC

1.632

1.423

H37Rv_KO_CtpD

1.273

1.728

H37Rv_KO_Rv1272

0.351

1.589

H37Rv_KO_SugABC

0.865

0.462

H37Rv_KO_MbtN

0.118

0.391

Trans05

1.333

1.529

macrophage_unactivated

-1.13

0.17

IL1

0.169

0.16

Rapamycin

-0.878

-0.945

Tcell

0.362

0.176

GMCSF

-2.075

-0.636

IFNab

-1.312

-0.729

IFNg

-1.601

-0.644

IFNg_GMCSF1

-1.882

-1.191

Rv1432_day32

0.0

0.0

Rv1565c_day32

0.535

-0.464

secA2_input

-0.186

-0.174

delta_Rv3594

-0.626

-0.85

delta_Rv3717

-0.693

-0.7

delta_Rv3811

-1.054

0.0

delta_Rv0954

-1.452

0.074

PonA1

-2.038

-0.547

EccD1_KO

-1.536

-0.171

EspI_KO

-0.279

0.55

PE35_KO

-0.995

-0.475

PPE68_KO

-1.091

0.0

glycerol2

0.601

1.334

lignocerate

-0.505

-0.751

oleate

0.425

0.044

phosphatidylcholine

0.482

0.209

acetate

-0.883

-0.522

glucAc

-1.352

-0.638

Rv0950ko

-0.694

1.701

Rv1096ko

0.781

1.007

Rv3684ko

0.301

0.757

delta_otsA_trehalose

1.858

0.435