Top 10 genes with highest correlation to Rv3551/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3870/eccCa1 | (cc=0.8713) | info on Rv3870/eccCa1 |
| Rv3616c/espA | (cc=0.8638) | info on Rv3616c/espA |
| Rv1568/bioA | (cc=0.8613) | info on Rv1568/bioA |
| Rv3882c/eccE1 | (cc=0.8602) | info on Rv3882c/eccE1 |
| Rv3544c/fadE28 | (cc=0.8601) | info on Rv3544c/fadE28 |
| Rv3502c/- | (cc=0.8591) | info on Rv3502c/- |
| Rv0485/- | (cc=0.8531) | info on Rv0485/- |
| Rv3883c/mycP1 | (cc=0.8503) | info on Rv3883c/mycP1 |
| Rv3871/eccCb1 | (cc=0.8463) | info on Rv3871/eccCb1 |
| Rv1589/bioB | (cc=0.8452) | info on Rv1589/bioB |
Correlation of Rv3551/- with Rv3870/eccCa1
Normalized LFCs for Rv3551/-:
(description and provenance of datasets)
| Rv3551/- | Rv3870/eccCa1 | |
| Fe_supp_jason_reseq | 0.737 | -1.088 |
| low_pH_jason_reseq | -0.647 | 0.325 |
| NO_jason_reseq | -0.601 | -0.291 |
| B6_jason_reseq | -1.96 | -2.875 |
| MHCII_jason_reseq | -1.726 | -3.014 |
| Isoniazid02 | -0.842 | -0.306 |
| Rifampicin4 | -0.165 | -0.888 |
| Ethambutol3 | -1.515 | -0.131 |
| Meropenem3 | 0.734 | 0.261 |
| Vancomycin16 | -1.008 | -0.215 |
| Rv2680_day32 | -1.788 | -1.924 |
| H37Rv_KO_MarP | 0.246 | 1.534 |
| hypoxia_3wks | 0.08 | -0.152 |
| hypoxia_6wks | -0.693 | 0.142 |
| glycerol | 1.148 | -0.78 |
| cholesterol | -3.657 | -0.197 |
| AJ | -5.857 | -5.284 |
| Bibs02 | -4.616 | -5.766 |
| Bibs02c | -5.282 | -4.15 |
| BL6 | -2.92 | -1.616 |
| BL6a | -5.001 | -4.402 |
| BXD01 | -3.288 | -3.251 |
| BXD010 | -2.306 | -2.846 |
| BXD011 | -2.59 | -2.901 |
| BXD03 | -3.28 | -2.571 |
| BXD04 | -2.999 | -2.748 |
| BXD05 | -3.029 | -2.789 |
| BXD06 | -3.37 | -3.586 |
| BXD07 | -3.496 | -2.661 |
| BXD08 | -3.226 | -3.816 |
| BXD09 | -3.408 | -3.836 |
| CAST | -4.838 | -4.883 |
| CCcont | -0.733 | -0.407 |
| DS01 | -5.963 | -4.356 |
| DS02 | -5.49 | -4.052 |
| DS04 | -4.367 | -2.155 |
| DS0c | -5.476 | -4.302 |
| GP01 | -2.304 | -2.367 |
| GP02 | -1.942 | -2.347 |
| GP0c | -1.016 | -0.842 |
| NOD | -1.847 | -1.925 |
| NZO | -4.838 | -5.444 |
| PWK | -4.757 | -5.533 |
| H37Rv_KO_CtpC | -3.94 | -1.66 |
| H37Rv_KO_CtpD | -2.576 | -1.651 |
| H37Rv_KO_Rv1272 | -3.56 | -1.806 |
| H37Rv_KO_SugABC | -1.783 | -0.647 |
| H37Rv_KO_MbtN | -1.855 | 0.049 |
| Trans05 | -3.299 | -1.38 |
| macrophage_unactivated | 0.66 | -0.262 |
| IL1 | -1.605 | -0.246 |
| Rapamycin | -1.093 | -0.288 |
| Tcell | -2.209 | -1.541 |
| GMCSF | 0.752 | 0.681 |
| IFNab | 2.283 | 1.859 |
| IFNg | -0.249 | -1.497 |
| IFNg_GMCSF1 | -0.606 | -1.313 |
| Rv1432_day32 | -3.863 | -2.52 |
| Rv1565c_day32 | -3.884 | -2.663 |
| secA2_input | -0.54 | 0.036 |
| delta_Rv3594 | -0.26 | 0.106 |
| delta_Rv3717 | 0.191 | -0.101 |
| delta_Rv3811 | 0.556 | -0.233 |
| delta_Rv0954 | 1.149 | 0.379 |
| PonA1 | 0.384 | 0.384 |
| EccD1_KO | 1.246 | 0.342 |
| EspI_KO | 0.539 | 0.633 |
| PE35_KO | 1.105 | 0.257 |
| PPE68_KO | 1.139 | 0.214 |
| glycerol2 | 0.289 | 0.423 |
| lignocerate | 0.785 | 0.792 |
| oleate | -0.537 | -0.193 |
| phosphatidylcholine | -0.106 | 0.531 |
| acetate | 2.234 | 0.095 |
| glucAc | 1.052 | 0.366 |
| Rv0950ko | 1.903 | 0.356 |
| Rv1096ko | 0.329 | -0.229 |
| Rv3684ko | 0.092 | 0.37 |
| delta_otsA_trehalose | 0.325 | -0.994 |