Top 10 genes with highest correlation to Rv3527/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0822c/- | (cc=0.5028) | info on Rv0822c/- |
| Rv1931c/- | (cc=0.496) | info on Rv1931c/- |
| Rv0805/- | (cc=0.4792) | info on Rv0805/- |
| Rv3126c/- | (cc=0.4772) | info on Rv3126c/- |
| Rv2211c/gcvT | (cc=0.4745) | info on Rv2211c/gcvT |
| Rv2389c/rpfD | (cc=0.4624) | info on Rv2389c/rpfD |
| Rv0388c/PPE9 | (cc=0.449) | info on Rv0388c/PPE9 |
| Rv2543/lppA | (cc=0.448) | info on Rv2543/lppA |
| Rv0371c/- | (cc=0.4478) | info on Rv0371c/- |
| Rv3398c/idsA1 | (cc=0.4451) | info on Rv3398c/idsA1 |
Correlation of Rv3527/- with Rv2543/lppA
Normalized LFCs for Rv3527/-:
(description and provenance of datasets)
| Rv3527/- | Rv2543/lppA | |
| Fe_supp_jason_reseq | -0.24 | 0.341 |
| low_pH_jason_reseq | -1.989 | -0.425 |
| NO_jason_reseq | -1.352 | -0.071 |
| B6_jason_reseq | -2.055 | -0.306 |
| MHCII_jason_reseq | -1.933 | -0.109 |
| Isoniazid02 | -0.239 | 0.646 |
| Rifampicin4 | 0.812 | 0.455 |
| Ethambutol3 | 0.275 | 0.298 |
| Meropenem3 | 0.423 | 0.446 |
| Vancomycin16 | 0.745 | 0.756 |
| Rv2680_day32 | 1.206 | 0.076 |
| H37Rv_KO_MarP | -0.693 | 0.251 |
| hypoxia_3wks | -0.494 | 0.148 |
| hypoxia_6wks | -0.319 | 0.411 |
| glycerol | 0.505 | 0.392 |
| cholesterol | -1.583 | -0.031 |
| AJ | 0.249 | 0.61 |
| Bibs02 | -0.909 | 0.735 |
| Bibs02c | 1.805 | 0.311 |
| BL6 | -0.231 | -0.333 |
| BL6a | 2.069 | 0.948 |
| BXD01 | -0.455 | -0.177 |
| BXD010 | 0.306 | 1.033 |
| BXD011 | 1.804 | 0.247 |
| BXD03 | 1.376 | 1.097 |
| BXD04 | 0.796 | 0.039 |
| BXD05 | 0.306 | 0.689 |
| BXD06 | 0.377 | 0.917 |
| BXD07 | 1.06 | 0.305 |
| BXD08 | 0.551 | 0.316 |
| BXD09 | 1.178 | 0.683 |
| CAST | 0.277 | 0.959 |
| CCcont | -0.109 | -0.016 |
| DS01 | 0.033 | 0.479 |
| DS02 | -0.032 | 0.711 |
| DS04 | 1.525 | 0.877 |
| DS0c | 0.204 | 0.888 |
| GP01 | -1.967 | 0.292 |
| GP02 | -1.658 | 0.421 |
| GP0c | -2.081 | 0.818 |
| NOD | 0.866 | 0.626 |
| NZO | 0.883 | 0.474 |
| PWK | -0.465 | -0.416 |
| H37Rv_KO_CtpC | 0.97 | 2.045 |
| H37Rv_KO_CtpD | 0.303 | 2.271 |
| H37Rv_KO_Rv1272 | -0.285 | 1.102 |
| H37Rv_KO_SugABC | -1.355 | -0.954 |
| H37Rv_KO_MbtN | -1.41 | 1.301 |
| Trans05 | -0.841 | 1.206 |
| macrophage_unactivated | -0.054 | 0.489 |
| IL1 | -0.178 | 0.62 |
| Rapamycin | 0.859 | 0.476 |
| Tcell | 0.081 | 0.228 |
| GMCSF | -0.203 | 0.62 |
| IFNab | 0.886 | -0.03 |
| IFNg | 0.131 | 0.214 |
| IFNg_GMCSF1 | 0.518 | 0.544 |
| Rv1432_day32 | -0.356 | -0.763 |
| Rv1565c_day32 | -1.579 | 0.583 |
| secA2_input | -1.293 | -1.478 |
| delta_Rv3594 | -2.424 | 0.546 |
| delta_Rv3717 | -0.856 | -0.573 |
| delta_Rv3811 | -3.15 | -0.553 |
| delta_Rv0954 | -2.507 | 0.01 |
| PonA1 | -1.009 | -0.429 |
| EccD1_KO | -0.299 | -0.806 |
| EspI_KO | 1.691 | 0.67 |
| PE35_KO | 0.181 | -0.158 |
| PPE68_KO | -0.042 | -0.026 |
| glycerol2 | -1.871 | -1.922 |
| lignocerate | -1.626 | -1.793 |
| oleate | -1.095 | -1.923 |
| phosphatidylcholine | -2.451 | -1.709 |
| acetate | -1.006 | -1.436 |
| glucAc | -1.764 | -1.04 |
| Rv0950ko | 0.82 | 0.507 |
| Rv1096ko | -0.124 | -0.769 |
| Rv3684ko | 0.586 | -0.943 |
| delta_otsA_trehalose | 0.722 | -0.209 |