Top 10 genes with highest correlation to Rv3527/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0822c/- | (cc=0.5028) | info on Rv0822c/- |
| Rv1931c/- | (cc=0.496) | info on Rv1931c/- |
| Rv0805/- | (cc=0.4792) | info on Rv0805/- |
| Rv3126c/- | (cc=0.4772) | info on Rv3126c/- |
| Rv2211c/gcvT | (cc=0.4745) | info on Rv2211c/gcvT |
| Rv2389c/rpfD | (cc=0.4624) | info on Rv2389c/rpfD |
| Rv0388c/PPE9 | (cc=0.449) | info on Rv0388c/PPE9 |
| Rv2543/lppA | (cc=0.448) | info on Rv2543/lppA |
| Rv0371c/- | (cc=0.4478) | info on Rv0371c/- |
| Rv3398c/idsA1 | (cc=0.4451) | info on Rv3398c/idsA1 |
Correlation of Rv3527/- with Rv0388c/PPE9
Normalized LFCs for Rv3527/-:
(description and provenance of datasets)
| Rv3527/- | Rv0388c/PPE9 | |
| Fe_supp_jason_reseq | -0.24 | -0.923 |
| low_pH_jason_reseq | -1.989 | -0.979 |
| NO_jason_reseq | -1.352 | -0.486 |
| B6_jason_reseq | -2.055 | -0.156 |
| MHCII_jason_reseq | -1.933 | -0.299 |
| Isoniazid02 | -0.239 | 0.02 |
| Rifampicin4 | 0.812 | 0.717 |
| Ethambutol3 | 0.275 | -0.086 |
| Meropenem3 | 0.423 | 0.332 |
| Vancomycin16 | 0.745 | -0.151 |
| Rv2680_day32 | 1.206 | -2.472 |
| H37Rv_KO_MarP | -0.693 | -0.072 |
| hypoxia_3wks | -0.494 | -0.355 |
| hypoxia_6wks | -0.319 | -0.679 |
| glycerol | 0.505 | -0.762 |
| cholesterol | -1.583 | 0.03 |
| AJ | 0.249 | 1.055 |
| Bibs02 | -0.909 | 0.918 |
| Bibs02c | 1.805 | 0.694 |
| BL6 | -0.231 | -0.721 |
| BL6a | 2.069 | 0.0 |
| BXD01 | -0.455 | 0.704 |
| BXD010 | 0.306 | 0.385 |
| BXD011 | 1.804 | 0.982 |
| BXD03 | 1.376 | 0.083 |
| BXD04 | 0.796 | -0.026 |
| BXD05 | 0.306 | 0.902 |
| BXD06 | 0.377 | -0.133 |
| BXD07 | 1.06 | 0.279 |
| BXD08 | 0.551 | 0.41 |
| BXD09 | 1.178 | 0.233 |
| CAST | 0.277 | 0.711 |
| CCcont | -0.109 | -0.167 |
| DS01 | 0.033 | 1.009 |
| DS02 | -0.032 | 1.457 |
| DS04 | 1.525 | 1.279 |
| DS0c | 0.204 | 0.896 |
| GP01 | -1.967 | -0.466 |
| GP02 | -1.658 | -1.01 |
| GP0c | -2.081 | -1.716 |
| NOD | 0.866 | 2.372 |
| NZO | 0.883 | 0.961 |
| PWK | -0.465 | 0.307 |
| H37Rv_KO_CtpC | 0.97 | 1.467 |
| H37Rv_KO_CtpD | 0.303 | -0.171 |
| H37Rv_KO_Rv1272 | -0.285 | 0.905 |
| H37Rv_KO_SugABC | -1.355 | 1.027 |
| H37Rv_KO_MbtN | -1.41 | 0.557 |
| Trans05 | -0.841 | 0.762 |
| macrophage_unactivated | -0.054 | 0.527 |
| IL1 | -0.178 | 2.002 |
| Rapamycin | 0.859 | 1.82 |
| Tcell | 0.081 | 0.691 |
| GMCSF | -0.203 | 1.196 |
| IFNab | 0.886 | 1.611 |
| IFNg | 0.131 | 0.505 |
| IFNg_GMCSF1 | 0.518 | 0.996 |
| Rv1432_day32 | -0.356 | 0.343 |
| Rv1565c_day32 | -1.579 | 0.0 |
| secA2_input | -1.293 | 0.28 |
| delta_Rv3594 | -2.424 | -1.077 |
| delta_Rv3717 | -0.856 | -2.451 |
| delta_Rv3811 | -3.15 | -1.142 |
| delta_Rv0954 | -2.507 | -0.09 |
| PonA1 | -1.009 | -0.77 |
| EccD1_KO | -0.299 | -0.184 |
| EspI_KO | 1.691 | 0.419 |
| PE35_KO | 0.181 | -0.478 |
| PPE68_KO | -0.042 | -0.899 |
| glycerol2 | -1.871 | -1.135 |
| lignocerate | -1.626 | -0.84 |
| oleate | -1.095 | -0.133 |
| phosphatidylcholine | -2.451 | -0.535 |
| acetate | -1.006 | -0.306 |
| glucAc | -1.764 | -1.076 |
| Rv0950ko | 0.82 | 0.639 |
| Rv1096ko | -0.124 | 0.73 |
| Rv3684ko | 0.586 | 0.891 |
| delta_otsA_trehalose | 0.722 | -0.356 |