Top 10 genes with highest correlation to Rv3522/ltp4:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0070c/glyA2 | (cc=0.5126) | info on Rv0070c/glyA2 |
| Rv3088/tgs4 | (cc=0.4952) | info on Rv3088/tgs4 |
| Rv0858c/dapC | (cc=0.4924) | info on Rv0858c/dapC |
| Rv2748c/ftsK | (cc=0.4866) | info on Rv2748c/ftsK |
| Rv3077/- | (cc=0.4833) | info on Rv3077/- |
| Rv1366/- | (cc=0.4772) | info on Rv1366/- |
| Rv1489A/- | (cc=0.4742) | info on Rv1489A/- |
| Rv0134/ephF | (cc=0.473) | info on Rv0134/ephF |
| Rv3081/- | (cc=0.4624) | info on Rv3081/- |
| Rv0312/- | (cc=0.4533) | info on Rv0312/- |
Correlation of Rv3522/ltp4 with Rv3077/-
Normalized LFCs for Rv3522/ltp4:
(description and provenance of datasets)
| Rv3522/ltp4 | Rv3077/- | |
| Fe_supp_jason_reseq | -0.17 | -0.412 |
| low_pH_jason_reseq | -0.097 | -0.453 |
| NO_jason_reseq | 0.289 | -0.087 |
| B6_jason_reseq | -0.446 | 0.009 |
| MHCII_jason_reseq | 0.866 | 0.317 |
| Isoniazid02 | -0.511 | -1.193 |
| Rifampicin4 | -0.068 | 0.693 |
| Ethambutol3 | 0.068 | -0.541 |
| Meropenem3 | 0.159 | -0.452 |
| Vancomycin16 | -0.202 | -0.475 |
| Rv2680_day32 | -1.285 | -0.234 |
| H37Rv_KO_MarP | 0.134 | 0.301 |
| hypoxia_3wks | -0.678 | -0.574 |
| hypoxia_6wks | -0.046 | -0.651 |
| glycerol | -0.508 | -0.374 |
| cholesterol | -0.439 | -0.276 |
| AJ | -0.682 | -0.43 |
| Bibs02 | -0.203 | -0.101 |
| Bibs02c | 0.546 | 0.239 |
| BL6 | -0.62 | 0.138 |
| BL6a | 0.495 | -0.274 |
| BXD01 | -0.163 | -0.493 |
| BXD010 | 0.202 | -0.315 |
| BXD011 | -0.208 | -0.064 |
| BXD03 | 0.433 | 0.093 |
| BXD04 | -0.385 | 0.116 |
| BXD05 | 0.476 | -0.106 |
| BXD06 | -0.009 | -0.233 |
| BXD07 | 0.31 | -0.264 |
| BXD08 | -0.081 | -0.253 |
| BXD09 | -0.451 | -0.461 |
| CAST | -0.759 | -0.307 |
| CCcont | 0.114 | -0.367 |
| DS01 | -0.315 | 0.092 |
| DS02 | -0.493 | 0.076 |
| DS04 | 0.818 | 0.564 |
| DS0c | 0.097 | -0.03 |
| GP01 | 0.451 | -0.36 |
| GP02 | 0.793 | 0.753 |
| GP0c | 0.565 | -0.206 |
| NOD | -0.952 | -0.103 |
| NZO | 0.14 | 0.244 |
| PWK | -0.013 | -0.352 |
| H37Rv_KO_CtpC | -1.024 | -0.985 |
| H37Rv_KO_CtpD | -0.537 | 0.41 |
| H37Rv_KO_Rv1272 | 0.576 | 0.0 |
| H37Rv_KO_SugABC | 0.481 | -0.142 |
| H37Rv_KO_MbtN | -0.285 | -0.684 |
| Trans05 | -0.145 | 0.269 |
| macrophage_unactivated | -0.436 | -0.306 |
| IL1 | -0.86 | 0.086 |
| Rapamycin | -0.276 | 0.043 |
| Tcell | -0.036 | -0.472 |
| GMCSF | 0.114 | -0.116 |
| IFNab | 0.033 | -0.248 |
| IFNg | -0.433 | -0.198 |
| IFNg_GMCSF1 | 0.427 | 0.415 |
| Rv1432_day32 | -0.353 | -0.156 |
| Rv1565c_day32 | 0.829 | 0.167 |
| secA2_input | 0.845 | 0.496 |
| delta_Rv3594 | -1.196 | -0.515 |
| delta_Rv3717 | -0.95 | -0.595 |
| delta_Rv3811 | -0.761 | -0.454 |
| delta_Rv0954 | -0.509 | 0.315 |
| PonA1 | -0.233 | 0.307 |
| EccD1_KO | -0.194 | -0.178 |
| EspI_KO | 0.046 | 0.22 |
| PE35_KO | -0.569 | -0.403 |
| PPE68_KO | -0.595 | -0.291 |
| glycerol2 | 0.947 | -0.025 |
| lignocerate | 1.382 | 0.656 |
| oleate | 0.0 | -0.376 |
| phosphatidylcholine | 1.098 | 0.259 |
| acetate | 1.273 | -0.138 |
| glucAc | 0.994 | 0.354 |
| Rv0950ko | 1.055 | 0.386 |
| Rv1096ko | 0.651 | 0.965 |
| Rv3684ko | 0.707 | 0.714 |
| delta_otsA_trehalose | 0.066 | 1.489 |