Top 10 genes with highest correlation to Rv3522/ltp4:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0070c/glyA2 | (cc=0.5126) | info on Rv0070c/glyA2 |
| Rv3088/tgs4 | (cc=0.4952) | info on Rv3088/tgs4 |
| Rv0858c/dapC | (cc=0.4924) | info on Rv0858c/dapC |
| Rv2748c/ftsK | (cc=0.4866) | info on Rv2748c/ftsK |
| Rv3077/- | (cc=0.4833) | info on Rv3077/- |
| Rv1366/- | (cc=0.4772) | info on Rv1366/- |
| Rv1489A/- | (cc=0.4742) | info on Rv1489A/- |
| Rv0134/ephF | (cc=0.473) | info on Rv0134/ephF |
| Rv3081/- | (cc=0.4624) | info on Rv3081/- |
| Rv0312/- | (cc=0.4533) | info on Rv0312/- |
Correlation of Rv3522/ltp4 with Rv1489A/-
Normalized LFCs for Rv3522/ltp4:
(description and provenance of datasets)
| Rv3522/ltp4 | Rv1489A/- | |
| Fe_supp_jason_reseq | -0.17 | -0.111 |
| low_pH_jason_reseq | -0.097 | -1.375 |
| NO_jason_reseq | 0.289 | -0.942 |
| B6_jason_reseq | -0.446 | -0.513 |
| MHCII_jason_reseq | 0.866 | -0.636 |
| Isoniazid02 | -0.511 | -4.051 |
| Rifampicin4 | -0.068 | 0.699 |
| Ethambutol3 | 0.068 | -3.827 |
| Meropenem3 | 0.159 | -3.157 |
| Vancomycin16 | -0.202 | -1.157 |
| Rv2680_day32 | -1.285 | 0.305 |
| H37Rv_KO_MarP | 0.134 | 0.36 |
| hypoxia_3wks | -0.678 | -1.001 |
| hypoxia_6wks | -0.046 | 0.251 |
| glycerol | -0.508 | -1.463 |
| cholesterol | -0.439 | -0.259 |
| AJ | -0.682 | -0.84 |
| Bibs02 | -0.203 | -1.856 |
| Bibs02c | 0.546 | 1.085 |
| BL6 | -0.62 | -0.816 |
| BL6a | 0.495 | -0.336 |
| BXD01 | -0.163 | -0.925 |
| BXD010 | 0.202 | -1.227 |
| BXD011 | -0.208 | -0.285 |
| BXD03 | 0.433 | -2.615 |
| BXD04 | -0.385 | 1.619 |
| BXD05 | 0.476 | -0.301 |
| BXD06 | -0.009 | 0.212 |
| BXD07 | 0.31 | -0.791 |
| BXD08 | -0.081 | 0.096 |
| BXD09 | -0.451 | -0.539 |
| CAST | -0.759 | -0.474 |
| CCcont | 0.114 | 0.118 |
| DS01 | -0.315 | 0.07 |
| DS02 | -0.493 | 0.429 |
| DS04 | 0.818 | -0.453 |
| DS0c | 0.097 | -0.506 |
| GP01 | 0.451 | 0.457 |
| GP02 | 0.793 | 0.998 |
| GP0c | 0.565 | 0.75 |
| NOD | -0.952 | -1.09 |
| NZO | 0.14 | 0.558 |
| PWK | -0.013 | 0.099 |
| H37Rv_KO_CtpC | -1.024 | -0.521 |
| H37Rv_KO_CtpD | -0.537 | -2.391 |
| H37Rv_KO_Rv1272 | 0.576 | 1.724 |
| H37Rv_KO_SugABC | 0.481 | 1.028 |
| H37Rv_KO_MbtN | -0.285 | -1.946 |
| Trans05 | -0.145 | 1.22 |
| macrophage_unactivated | -0.436 | -1.061 |
| IL1 | -0.86 | 0.472 |
| Rapamycin | -0.276 | -0.485 |
| Tcell | -0.036 | -0.723 |
| GMCSF | 0.114 | 0.0 |
| IFNab | 0.033 | -1.088 |
| IFNg | -0.433 | -1.903 |
| IFNg_GMCSF1 | 0.427 | 0.339 |
| Rv1432_day32 | -0.353 | 1.313 |
| Rv1565c_day32 | 0.829 | -0.509 |
| secA2_input | 0.845 | 1.069 |
| delta_Rv3594 | -1.196 | -0.737 |
| delta_Rv3717 | -0.95 | -0.781 |
| delta_Rv3811 | -0.761 | -1.05 |
| delta_Rv0954 | -0.509 | -2.142 |
| PonA1 | -0.233 | -0.815 |
| EccD1_KO | -0.194 | 1.151 |
| EspI_KO | 0.046 | 0.328 |
| PE35_KO | -0.569 | -0.271 |
| PPE68_KO | -0.595 | 0.0 |
| glycerol2 | 0.947 | 2.945 |
| lignocerate | 1.382 | 3.993 |
| oleate | 0.0 | -0.713 |
| phosphatidylcholine | 1.098 | 3.322 |
| acetate | 1.273 | 5.361 |
| glucAc | 0.994 | 4.14 |
| Rv0950ko | 1.055 | -0.416 |
| Rv1096ko | 0.651 | -0.85 |
| Rv3684ko | 0.707 | -0.612 |
| delta_otsA_trehalose | 0.066 | -0.694 |