Top 10 genes with highest correlation to Rv3511/PE_PGRS55:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0834c/PE_PGRS14 | (cc=0.7185) | info on Rv0834c/PE_PGRS14 |
| Rv3508/PE_PGRS54 | (cc=0.6409) | info on Rv3508/PE_PGRS54 |
| Rv3512/PE_PGRS56 | (cc=0.5701) | info on Rv3512/PE_PGRS56 |
| Rv0235c/- | (cc=0.5471) | info on Rv0235c/- |
| Rv3514/PE_PGRS57 | (cc=0.5468) | info on Rv3514/PE_PGRS57 |
| Rv3345c/PE_PGRS50 | (cc=0.5418) | info on Rv3345c/PE_PGRS50 |
| Rv1891/- | (cc=0.5372) | info on Rv1891/- |
| Rv0833/PE_PGRS13 | (cc=0.5355) | info on Rv0833/PE_PGRS13 |
| Rv3394c/- | (cc=0.5008) | info on Rv3394c/- |
| Rv0354c/PPE7 | (cc=0.5006) | info on Rv0354c/PPE7 |
Correlation of Rv3511/PE_PGRS55 with Rv3514/PE_PGRS57
Normalized LFCs for Rv3511/PE_PGRS55:
(description and provenance of datasets)
| Rv3511/PE_PGRS55 | Rv3514/PE_PGRS57 | |
| Fe_supp_jason_reseq | -0.718 | -0.175 |
| low_pH_jason_reseq | -0.269 | -1.188 |
| NO_jason_reseq | -0.278 | 0.137 |
| B6_jason_reseq | -0.682 | -0.52 |
| MHCII_jason_reseq | 0.111 | 0.325 |
| Isoniazid02 | -1.059 | -1.215 |
| Rifampicin4 | 0.444 | 0.33 |
| Ethambutol3 | -0.565 | -0.563 |
| Meropenem3 | -0.213 | -1.106 |
| Vancomycin16 | -0.348 | -0.589 |
| Rv2680_day32 | -0.922 | 0.417 |
| H37Rv_KO_MarP | 0.014 | -0.158 |
| hypoxia_3wks | -0.618 | 0.0 |
| hypoxia_6wks | -1.347 | -0.388 |
| glycerol | 0.686 | 0.736 |
| cholesterol | 0.429 | 0.55 |
| AJ | 0.844 | 0.881 |
| Bibs02 | -0.334 | 0.579 |
| Bibs02c | 0.685 | 0.662 |
| BL6 | -0.228 | -0.413 |
| BL6a | 0.321 | 0.529 |
| BXD01 | 0.31 | 0.135 |
| BXD010 | -0.196 | -0.244 |
| BXD011 | -0.297 | -0.147 |
| BXD03 | 1.067 | 0.113 |
| BXD04 | 0.287 | 0.152 |
| BXD05 | 0.589 | 0.216 |
| BXD06 | 0.178 | 0.423 |
| BXD07 | 0.41 | 0.347 |
| BXD08 | 0.632 | 0.919 |
| BXD09 | 0.287 | 0.278 |
| CAST | 0.075 | 0.0 |
| CCcont | -0.025 | -0.136 |
| DS01 | -0.866 | 0.0 |
| DS02 | -0.112 | 0.268 |
| DS04 | -0.083 | 1.384 |
| DS0c | -0.484 | -0.357 |
| GP01 | 0.579 | 1.203 |
| GP02 | 1.313 | 1.187 |
| GP0c | 0.699 | 1.024 |
| NOD | -0.322 | -0.205 |
| NZO | 1.052 | 0.085 |
| PWK | 0.374 | 0.458 |
| H37Rv_KO_CtpC | 0.561 | 0.069 |
| H37Rv_KO_CtpD | 0.302 | -0.028 |
| H37Rv_KO_Rv1272 | 0.058 | 0.877 |
| H37Rv_KO_SugABC | 0.649 | -0.558 |
| H37Rv_KO_MbtN | 0.319 | 0.903 |
| Trans05 | 1.249 | 0.393 |
| macrophage_unactivated | 0.073 | -0.249 |
| IL1 | -0.59 | -0.75 |
| Rapamycin | -0.611 | -0.776 |
| Tcell | -0.479 | -0.925 |
| GMCSF | 0.544 | -0.069 |
| IFNab | -0.683 | -1.36 |
| IFNg | -0.497 | -1.494 |
| IFNg_GMCSF1 | -0.421 | -0.606 |
| Rv1432_day32 | 1.036 | 0.913 |
| Rv1565c_day32 | -0.524 | 0.153 |
| secA2_input | 0.446 | -0.424 |
| delta_Rv3594 | -0.135 | -0.693 |
| delta_Rv3717 | -0.53 | -0.826 |
| delta_Rv3811 | -0.349 | -0.455 |
| delta_Rv0954 | -0.808 | -1.092 |
| PonA1 | 0.0 | -0.074 |
| EccD1_KO | 0.444 | 0.049 |
| EspI_KO | -0.225 | 0.0 |
| PE35_KO | -0.63 | -0.23 |
| PPE68_KO | -0.733 | -0.202 |
| glycerol2 | 0.248 | 0.0 |
| lignocerate | 0.342 | 0.0 |
| oleate | 0.166 | -0.156 |
| phosphatidylcholine | 0.221 | 0.0 |
| acetate | -0.057 | 0.427 |
| glucAc | -0.023 | 0.664 |
| Rv0950ko | 0.609 | -0.229 |
| Rv1096ko | 0.531 | 0.271 |
| Rv3684ko | -0.193 | -0.062 |
| delta_otsA_trehalose | -1.443 | 0.42 |