Top 10 genes with highest correlation to Rv3511/PE_PGRS55:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0834c/PE_PGRS14 | (cc=0.7185) | info on Rv0834c/PE_PGRS14 |
| Rv3508/PE_PGRS54 | (cc=0.6409) | info on Rv3508/PE_PGRS54 |
| Rv3512/PE_PGRS56 | (cc=0.5701) | info on Rv3512/PE_PGRS56 |
| Rv0235c/- | (cc=0.5471) | info on Rv0235c/- |
| Rv3514/PE_PGRS57 | (cc=0.5468) | info on Rv3514/PE_PGRS57 |
| Rv3345c/PE_PGRS50 | (cc=0.5418) | info on Rv3345c/PE_PGRS50 |
| Rv1891/- | (cc=0.5372) | info on Rv1891/- |
| Rv0833/PE_PGRS13 | (cc=0.5355) | info on Rv0833/PE_PGRS13 |
| Rv3394c/- | (cc=0.5008) | info on Rv3394c/- |
| Rv0354c/PPE7 | (cc=0.5006) | info on Rv0354c/PPE7 |
Correlation of Rv3511/PE_PGRS55 with Rv3508/PE_PGRS54
Normalized LFCs for Rv3511/PE_PGRS55:
(description and provenance of datasets)
| Rv3511/PE_PGRS55 | Rv3508/PE_PGRS54 | |
| Fe_supp_jason_reseq | -0.718 | -0.532 |
| low_pH_jason_reseq | -0.269 | 0.0 |
| NO_jason_reseq | -0.278 | 0.0 |
| B6_jason_reseq | -0.682 | -0.103 |
| MHCII_jason_reseq | 0.111 | 0.591 |
| Isoniazid02 | -1.059 | -2.021 |
| Rifampicin4 | 0.444 | 0.772 |
| Ethambutol3 | -0.565 | -1.28 |
| Meropenem3 | -0.213 | -1.748 |
| Vancomycin16 | -0.348 | -0.727 |
| Rv2680_day32 | -0.922 | 0.046 |
| H37Rv_KO_MarP | 0.014 | -0.103 |
| hypoxia_3wks | -0.618 | -0.215 |
| hypoxia_6wks | -1.347 | -0.616 |
| glycerol | 0.686 | 1.028 |
| cholesterol | 0.429 | 0.648 |
| AJ | 0.844 | 0.726 |
| Bibs02 | -0.334 | 0.73 |
| Bibs02c | 0.685 | 0.415 |
| BL6 | -0.228 | -0.269 |
| BL6a | 0.321 | 0.27 |
| BXD01 | 0.31 | 0.259 |
| BXD010 | -0.196 | -0.276 |
| BXD011 | -0.297 | -0.236 |
| BXD03 | 1.067 | -0.033 |
| BXD04 | 0.287 | 0.03 |
| BXD05 | 0.589 | 0.397 |
| BXD06 | 0.178 | 0.182 |
| BXD07 | 0.41 | 0.408 |
| BXD08 | 0.632 | 0.947 |
| BXD09 | 0.287 | 0.162 |
| CAST | 0.075 | 0.364 |
| CCcont | -0.025 | -0.193 |
| DS01 | -0.866 | -0.058 |
| DS02 | -0.112 | 0.104 |
| DS04 | -0.083 | 0.607 |
| DS0c | -0.484 | -0.28 |
| GP01 | 0.579 | 1.149 |
| GP02 | 1.313 | 1.255 |
| GP0c | 0.699 | 1.092 |
| NOD | -0.322 | -0.169 |
| NZO | 1.052 | 0.272 |
| PWK | 0.374 | 0.783 |
| H37Rv_KO_CtpC | 0.561 | -0.209 |
| H37Rv_KO_CtpD | 0.302 | 0.441 |
| H37Rv_KO_Rv1272 | 0.058 | 0.934 |
| H37Rv_KO_SugABC | 0.649 | -0.243 |
| H37Rv_KO_MbtN | 0.319 | 0.184 |
| Trans05 | 1.249 | 0.361 |
| macrophage_unactivated | 0.073 | -0.287 |
| IL1 | -0.59 | -0.365 |
| Rapamycin | -0.611 | -1.126 |
| Tcell | -0.479 | -1.072 |
| GMCSF | 0.544 | -0.158 |
| IFNab | -0.683 | -1.345 |
| IFNg | -0.497 | -1.082 |
| IFNg_GMCSF1 | -0.421 | -0.698 |
| Rv1432_day32 | 1.036 | 0.855 |
| Rv1565c_day32 | -0.524 | -0.52 |
| secA2_input | 0.446 | 0.131 |
| delta_Rv3594 | -0.135 | -0.402 |
| delta_Rv3717 | -0.53 | -0.352 |
| delta_Rv3811 | -0.349 | -0.269 |
| delta_Rv0954 | -0.808 | -1.151 |
| PonA1 | 0.0 | 0.032 |
| EccD1_KO | 0.444 | -0.207 |
| EspI_KO | -0.225 | 0.043 |
| PE35_KO | -0.63 | -0.28 |
| PPE68_KO | -0.733 | -0.525 |
| glycerol2 | 0.248 | 0.347 |
| lignocerate | 0.342 | 0.157 |
| oleate | 0.166 | 0.296 |
| phosphatidylcholine | 0.221 | 0.451 |
| acetate | -0.057 | 0.474 |
| glucAc | -0.023 | 0.753 |
| Rv0950ko | 0.609 | -0.057 |
| Rv1096ko | 0.531 | 0.226 |
| Rv3684ko | -0.193 | -0.193 |
| delta_otsA_trehalose | -1.443 | -0.026 |