Top 10 genes with highest correlation to Rv3507/PE_PGRS53:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1004c/- | (cc=0.5422) | info on Rv1004c/- |
| Rv1452c/PE_PGRS28 | (cc=0.5389) | info on Rv1452c/PE_PGRS28 |
| Rv0317c/glpQ2 | (cc=0.5358) | info on Rv0317c/glpQ2 |
| Rv0578c/PE_PGRS7 | (cc=0.4913) | info on Rv0578c/PE_PGRS7 |
| Rv3345c/PE_PGRS50 | (cc=0.4823) | info on Rv3345c/PE_PGRS50 |
| Rv3401/- | (cc=0.4776) | info on Rv3401/- |
| Rv0279c/PE_PGRS4 | (cc=0.4775) | info on Rv0279c/PE_PGRS4 |
| Rv1781c/malQ | (cc=0.4722) | info on Rv1781c/malQ |
| Rv1818c/PE_PGRS33 | (cc=0.4678) | info on Rv1818c/PE_PGRS33 |
| Rv2066/cobI | (cc=0.4653) | info on Rv2066/cobI |
Correlation of Rv3507/PE_PGRS53 with Rv3401/-
Normalized LFCs for Rv3507/PE_PGRS53:
(description and provenance of datasets)
| Rv3507/PE_PGRS53 | Rv3401/- | |
| Fe_supp_jason_reseq | -0.614 | 0.0 |
| low_pH_jason_reseq | 0.043 | -0.659 |
| NO_jason_reseq | -0.139 | -0.026 |
| B6_jason_reseq | -0.47 | 0.695 |
| MHCII_jason_reseq | 0.075 | 0.952 |
| Isoniazid02 | -0.083 | 0.383 |
| Rifampicin4 | 0.812 | 0.244 |
| Ethambutol3 | 0.665 | 0.72 |
| Meropenem3 | 0.829 | 1.518 |
| Vancomycin16 | 0.35 | -0.082 |
| Rv2680_day32 | 0.814 | 1.336 |
| H37Rv_KO_MarP | 0.47 | 0.23 |
| hypoxia_3wks | 0.207 | -0.068 |
| hypoxia_6wks | -0.687 | -0.035 |
| glycerol | 1.441 | -0.053 |
| cholesterol | 1.125 | 1.523 |
| AJ | 0.57 | -0.131 |
| Bibs02 | 0.449 | 0.567 |
| Bibs02c | 0.584 | -0.156 |
| BL6 | -0.642 | -0.906 |
| BL6a | -0.131 | -0.97 |
| BXD01 | -0.057 | -0.89 |
| BXD010 | -0.114 | -0.854 |
| BXD011 | -0.653 | -0.556 |
| BXD03 | 0.057 | -0.564 |
| BXD04 | -0.511 | -0.606 |
| BXD05 | -0.058 | -0.793 |
| BXD06 | -0.355 | -1.097 |
| BXD07 | -0.446 | -0.687 |
| BXD08 | -0.317 | -0.624 |
| BXD09 | -0.335 | -0.892 |
| CAST | 0.527 | 0.269 |
| CCcont | -0.317 | -1.095 |
| DS01 | -0.563 | 0.548 |
| DS02 | 0.0 | 0.421 |
| DS04 | 0.342 | 0.602 |
| DS0c | 0.135 | 0.404 |
| GP01 | 1.147 | 0.349 |
| GP02 | 0.955 | 0.307 |
| GP0c | 0.405 | -0.109 |
| NOD | 1.209 | 0.906 |
| NZO | 0.0 | -0.205 |
| PWK | -0.129 | -0.354 |
| H37Rv_KO_CtpC | 0.506 | -0.54 |
| H37Rv_KO_CtpD | 0.944 | 0.537 |
| H37Rv_KO_Rv1272 | 0.461 | -0.305 |
| H37Rv_KO_SugABC | -0.348 | -0.478 |
| H37Rv_KO_MbtN | 0.487 | -0.036 |
| Trans05 | 0.635 | 0.384 |
| macrophage_unactivated | 0.524 | -0.925 |
| IL1 | 0.0 | -0.97 |
| Rapamycin | -0.11 | -0.829 |
| Tcell | -0.613 | -0.671 |
| GMCSF | 0.182 | -0.57 |
| IFNab | -0.816 | -1.022 |
| IFNg | 0.184 | -0.123 |
| IFNg_GMCSF1 | 0.421 | 0.251 |
| Rv1432_day32 | 0.266 | 0.757 |
| Rv1565c_day32 | -0.069 | 0.763 |
| secA2_input | -0.285 | 0.261 |
| delta_Rv3594 | -0.13 | -0.223 |
| delta_Rv3717 | 0.574 | -0.227 |
| delta_Rv3811 | 0.678 | -0.235 |
| delta_Rv0954 | -0.11 | 0.088 |
| PonA1 | 0.323 | 0.323 |
| EccD1_KO | -0.375 | -0.033 |
| EspI_KO | -0.411 | -0.086 |
| PE35_KO | -1.041 | -0.146 |
| PPE68_KO | -1.312 | -0.16 |
| glycerol2 | -0.261 | 0.083 |
| lignocerate | -0.197 | -0.571 |
| oleate | -0.23 | -0.647 |
| phosphatidylcholine | -0.406 | -0.13 |
| acetate | -0.667 | -0.191 |
| glucAc | 0.044 | -0.389 |
| Rv0950ko | 0.359 | 0.093 |
| Rv1096ko | 0.525 | 0.184 |
| Rv3684ko | 0.39 | -0.105 |
| delta_otsA_trehalose | 0.27 | 0.465 |