Top 10 genes with highest correlation to Rv3507/PE_PGRS53:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1004c/- | (cc=0.5422) | info on Rv1004c/- |
| Rv1452c/PE_PGRS28 | (cc=0.5389) | info on Rv1452c/PE_PGRS28 |
| Rv0317c/glpQ2 | (cc=0.5358) | info on Rv0317c/glpQ2 |
| Rv0578c/PE_PGRS7 | (cc=0.4913) | info on Rv0578c/PE_PGRS7 |
| Rv3345c/PE_PGRS50 | (cc=0.4823) | info on Rv3345c/PE_PGRS50 |
| Rv3401/- | (cc=0.4776) | info on Rv3401/- |
| Rv0279c/PE_PGRS4 | (cc=0.4775) | info on Rv0279c/PE_PGRS4 |
| Rv1781c/malQ | (cc=0.4722) | info on Rv1781c/malQ |
| Rv1818c/PE_PGRS33 | (cc=0.4678) | info on Rv1818c/PE_PGRS33 |
| Rv2066/cobI | (cc=0.4653) | info on Rv2066/cobI |
Correlation of Rv3507/PE_PGRS53 with Rv1452c/PE_PGRS28
Normalized LFCs for Rv3507/PE_PGRS53:
(description and provenance of datasets)
| Rv3507/PE_PGRS53 | Rv1452c/PE_PGRS28 | |
| Fe_supp_jason_reseq | -0.614 | -0.046 |
| low_pH_jason_reseq | 0.043 | -0.765 |
| NO_jason_reseq | -0.139 | -0.396 |
| B6_jason_reseq | -0.47 | -0.24 |
| MHCII_jason_reseq | 0.075 | 0.75 |
| Isoniazid02 | -0.083 | 1.064 |
| Rifampicin4 | 0.812 | 0.636 |
| Ethambutol3 | 0.665 | 0.911 |
| Meropenem3 | 0.829 | 1.12 |
| Vancomycin16 | 0.35 | 0.027 |
| Rv2680_day32 | 0.814 | -0.669 |
| H37Rv_KO_MarP | 0.47 | -0.555 |
| hypoxia_3wks | 0.207 | 0.0 |
| hypoxia_6wks | -0.687 | -0.411 |
| glycerol | 1.441 | 1.849 |
| cholesterol | 1.125 | 0.649 |
| AJ | 0.57 | 1.04 |
| Bibs02 | 0.449 | 1.558 |
| Bibs02c | 0.584 | 1.122 |
| BL6 | -0.642 | 0.057 |
| BL6a | -0.131 | 0.462 |
| BXD01 | -0.057 | 0.149 |
| BXD010 | -0.114 | -0.125 |
| BXD011 | -0.653 | 0.306 |
| BXD03 | 0.057 | 0.132 |
| BXD04 | -0.511 | 0.1 |
| BXD05 | -0.058 | 0.667 |
| BXD06 | -0.355 | -0.187 |
| BXD07 | -0.446 | 0.323 |
| BXD08 | -0.317 | 0.34 |
| BXD09 | -0.335 | 0.039 |
| CAST | 0.527 | 0.719 |
| CCcont | -0.317 | -0.325 |
| DS01 | -0.563 | 0.31 |
| DS02 | 0.0 | 0.474 |
| DS04 | 0.342 | 1.313 |
| DS0c | 0.135 | -0.041 |
| GP01 | 1.147 | 0.825 |
| GP02 | 0.955 | 1.219 |
| GP0c | 0.405 | 1.25 |
| NOD | 1.209 | 1.396 |
| NZO | 0.0 | 0.595 |
| PWK | -0.129 | 0.192 |
| H37Rv_KO_CtpC | 0.506 | 0.993 |
| H37Rv_KO_CtpD | 0.944 | 1.665 |
| H37Rv_KO_Rv1272 | 0.461 | -0.095 |
| H37Rv_KO_SugABC | -0.348 | 0.531 |
| H37Rv_KO_MbtN | 0.487 | 0.843 |
| Trans05 | 0.635 | 0.095 |
| macrophage_unactivated | 0.524 | -0.028 |
| IL1 | 0.0 | 0.05 |
| Rapamycin | -0.11 | -0.276 |
| Tcell | -0.613 | -0.74 |
| GMCSF | 0.182 | 0.734 |
| IFNab | -0.816 | -0.656 |
| IFNg | 0.184 | -0.048 |
| IFNg_GMCSF1 | 0.421 | -0.057 |
| Rv1432_day32 | 0.266 | 0.754 |
| Rv1565c_day32 | -0.069 | -0.635 |
| secA2_input | -0.285 | -0.653 |
| delta_Rv3594 | -0.13 | -0.217 |
| delta_Rv3717 | 0.574 | 0.477 |
| delta_Rv3811 | 0.678 | -0.125 |
| delta_Rv0954 | -0.11 | -0.667 |
| PonA1 | 0.323 | -0.299 |
| EccD1_KO | -0.375 | 0.724 |
| EspI_KO | -0.411 | -0.345 |
| PE35_KO | -1.041 | 0.079 |
| PPE68_KO | -1.312 | -0.202 |
| glycerol2 | -0.261 | -0.581 |
| lignocerate | -0.197 | -0.567 |
| oleate | -0.23 | -0.345 |
| phosphatidylcholine | -0.406 | -0.164 |
| acetate | -0.667 | -0.982 |
| glucAc | 0.044 | 0.026 |
| Rv0950ko | 0.359 | 0.042 |
| Rv1096ko | 0.525 | 0.223 |
| Rv3684ko | 0.39 | -0.255 |
| delta_otsA_trehalose | 0.27 | -1.019 |