Top 10 genes with highest correlation to Rv3507/PE_PGRS53:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1004c/- | (cc=0.5422) | info on Rv1004c/- |
| Rv1452c/PE_PGRS28 | (cc=0.5389) | info on Rv1452c/PE_PGRS28 |
| Rv0317c/glpQ2 | (cc=0.5358) | info on Rv0317c/glpQ2 |
| Rv0578c/PE_PGRS7 | (cc=0.4913) | info on Rv0578c/PE_PGRS7 |
| Rv3345c/PE_PGRS50 | (cc=0.4823) | info on Rv3345c/PE_PGRS50 |
| Rv3401/- | (cc=0.4776) | info on Rv3401/- |
| Rv0279c/PE_PGRS4 | (cc=0.4775) | info on Rv0279c/PE_PGRS4 |
| Rv1781c/malQ | (cc=0.4722) | info on Rv1781c/malQ |
| Rv1818c/PE_PGRS33 | (cc=0.4678) | info on Rv1818c/PE_PGRS33 |
| Rv2066/cobI | (cc=0.4653) | info on Rv2066/cobI |
Correlation of Rv3507/PE_PGRS53 with Rv0578c/PE_PGRS7
Normalized LFCs for Rv3507/PE_PGRS53:
(description and provenance of datasets)
| Rv3507/PE_PGRS53 | Rv0578c/PE_PGRS7 | |
| Fe_supp_jason_reseq | -0.614 | -2.133 |
| low_pH_jason_reseq | 0.043 | -0.806 |
| NO_jason_reseq | -0.139 | -0.99 |
| B6_jason_reseq | -0.47 | -0.628 |
| MHCII_jason_reseq | 0.075 | -0.418 |
| Isoniazid02 | -0.083 | -0.735 |
| Rifampicin4 | 0.812 | 0.42 |
| Ethambutol3 | 0.665 | 1.592 |
| Meropenem3 | 0.829 | 0.944 |
| Vancomycin16 | 0.35 | -0.271 |
| Rv2680_day32 | 0.814 | 0.172 |
| H37Rv_KO_MarP | 0.47 | 0.574 |
| hypoxia_3wks | 0.207 | -0.231 |
| hypoxia_6wks | -0.687 | -0.808 |
| glycerol | 1.441 | 0.238 |
| cholesterol | 1.125 | 0.276 |
| AJ | 0.57 | 0.983 |
| Bibs02 | 0.449 | 0.588 |
| Bibs02c | 0.584 | 0.828 |
| BL6 | -0.642 | -1.265 |
| BL6a | -0.131 | -0.739 |
| BXD01 | -0.057 | -0.89 |
| BXD010 | -0.114 | -0.64 |
| BXD011 | -0.653 | -0.87 |
| BXD03 | 0.057 | -0.464 |
| BXD04 | -0.511 | -0.796 |
| BXD05 | -0.058 | -0.386 |
| BXD06 | -0.355 | -1.211 |
| BXD07 | -0.446 | -0.788 |
| BXD08 | -0.317 | 0.107 |
| BXD09 | -0.335 | -0.702 |
| CAST | 0.527 | 0.095 |
| CCcont | -0.317 | -1.146 |
| DS01 | -0.563 | -0.101 |
| DS02 | 0.0 | 0.175 |
| DS04 | 0.342 | 0.624 |
| DS0c | 0.135 | -0.14 |
| GP01 | 1.147 | -0.31 |
| GP02 | 0.955 | -0.054 |
| GP0c | 0.405 | -0.113 |
| NOD | 1.209 | -0.583 |
| NZO | 0.0 | 0.0 |
| PWK | -0.129 | 0.269 |
| H37Rv_KO_CtpC | 0.506 | -0.511 |
| H37Rv_KO_CtpD | 0.944 | 0.606 |
| H37Rv_KO_Rv1272 | 0.461 | 0.141 |
| H37Rv_KO_SugABC | -0.348 | -0.37 |
| H37Rv_KO_MbtN | 0.487 | -0.481 |
| Trans05 | 0.635 | -0.056 |
| macrophage_unactivated | 0.524 | -1.891 |
| IL1 | 0.0 | -2.186 |
| Rapamycin | -0.11 | -2.569 |
| Tcell | -0.613 | -2.098 |
| GMCSF | 0.182 | -1.251 |
| IFNab | -0.816 | -2.851 |
| IFNg | 0.184 | -2.376 |
| IFNg_GMCSF1 | 0.421 | -1.882 |
| Rv1432_day32 | 0.266 | 1.064 |
| Rv1565c_day32 | -0.069 | -0.182 |
| secA2_input | -0.285 | 0.814 |
| delta_Rv3594 | -0.13 | 0.142 |
| delta_Rv3717 | 0.574 | -0.232 |
| delta_Rv3811 | 0.678 | -0.375 |
| delta_Rv0954 | -0.11 | -0.544 |
| PonA1 | 0.323 | -0.091 |
| EccD1_KO | -0.375 | -0.237 |
| EspI_KO | -0.411 | -0.536 |
| PE35_KO | -1.041 | -0.607 |
| PPE68_KO | -1.312 | -0.602 |
| glycerol2 | -0.261 | -1.852 |
| lignocerate | -0.197 | -2.21 |
| oleate | -0.23 | -1.528 |
| phosphatidylcholine | -0.406 | -1.852 |
| acetate | -0.667 | -2.135 |
| glucAc | 0.044 | -1.532 |
| Rv0950ko | 0.359 | -0.133 |
| Rv1096ko | 0.525 | 0.718 |
| Rv3684ko | 0.39 | 0.534 |
| delta_otsA_trehalose | 0.27 | -0.341 |