TnSeqCorr

Top 10 genes with highest correlation to Rv3501c/yrbE4A:

update plotcorrelationlink to info on gene
Rv3497c/mce4C (cc=0.892) info on Rv3497c/mce4C
Rv3500c/yrbE4B (cc=0.8667) info on Rv3500c/yrbE4B
Rv3496c/mce4D (cc=0.857) info on Rv3496c/mce4D
Rv3498c/mce4B (cc=0.8542) info on Rv3498c/mce4B
Rv3499c/mce4A (cc=0.8241) info on Rv3499c/mce4A
Rv3494c/mce4F (cc=0.815) info on Rv3494c/mce4F
Rv3495c/lprN (cc=0.8107) info on Rv3495c/lprN
Rv3492c/- (cc=0.7611) info on Rv3492c/-
Rv2799/- (cc=0.7332) info on Rv2799/-
Rv0202c/mmpL11 (cc=0.6938) info on Rv0202c/mmpL11

Correlation of Rv3501c/yrbE4A with Rv3497c/mce4C

Normalized LFCs for Rv3501c/yrbE4A:
(description and provenance of datasets)
Rv3501c/yrbE4ARv3497c/mce4C
Fe_supp_jason_reseq

1.012

0.695

low_pH_jason_reseq

-0.326

-0.423

NO_jason_reseq

0.58

0.257

B6_jason_reseq

-1.279

-0.97

MHCII_jason_reseq

-2.391

-2.025

Isoniazid02

0.595

0.888

Rifampicin4

0.628

0.704

Ethambutol3

1.582

0.664

Meropenem3

0.162

-0.497

Vancomycin16

0.806

0.472

Rv2680_day32

-2.546

-1.164

H37Rv_KO_MarP

0.593

0.82

hypoxia_3wks

0.02

0.06

hypoxia_6wks

0.01

0.397

glycerol

-0.724

-0.064

cholesterol

-3.897

-3.509

AJ

-3.578

-3.019

Bibs02

-0.253

-0.754

Bibs02c

-1.17

-1.041

BL6

0.509

-0.337

BL6a

-0.839

-1.142

BXD01

-0.422

0.03

BXD010

-0.514

-0.528

BXD011

-0.475

-0.305

BXD03

-0.332

-0.917

BXD04

-0.478

-0.68

BXD05

-0.148

-1.063

BXD06

-0.545

-0.373

BXD07

-0.526

-0.491

BXD08

-0.534

-0.204

BXD09

-0.544

-0.452

CAST

-3.056

-2.196

CCcont

1.143

1.003

DS01

-1.906

-2.827

DS02

-2.002

-1.575

DS04

-1.834

-1.775

DS0c

-2.077

-1.606

GP01

0.999

-0.34

GP02

0.813

-0.383

GP0c

0.702

0.436

NOD

-1.181

-2.327

NZO

-2.647

-1.902

PWK

-2.404

-1.795

H37Rv_KO_CtpC

-1.477

-1.426

H37Rv_KO_CtpD

-0.385

-1.208

H37Rv_KO_Rv1272

0.593

-1.373

H37Rv_KO_SugABC

0.685

-0.108

H37Rv_KO_MbtN

1.06

0.166

Trans05

0.019

-0.224

macrophage_unactivated

-1.061

-0.978

IL1

2.035

2.337

Rapamycin

1.847

1.749

Tcell

-0.456

0.072

GMCSF

-1.677

-1.296

IFNab

-1.871

-1.917

IFNg

-0.604

-0.962

IFNg_GMCSF1

-0.635

-0.641

Rv1432_day32

-2.587

-2.405

Rv1565c_day32

-2.279

-2.939

secA2_input

-0.647

-0.446

delta_Rv3594

0.506

-0.242

delta_Rv3717

-0.206

-0.072

delta_Rv3811

0.248

-0.205

delta_Rv0954

-0.634

-0.331

PonA1

0.031

-0.56

EccD1_KO

-0.135

0.21

EspI_KO

-0.405

-0.094

PE35_KO

-0.385

-0.373

PPE68_KO

-0.058

-0.733

glycerol2

0.118

-0.057

lignocerate

1.43

1.076

oleate

0.726

1.181

phosphatidylcholine

0.22

0.0

acetate

0.959

0.033

glucAc

0.671

0.337

Rv0950ko

0.03

-0.353

Rv1096ko

0.347

0.356

Rv3684ko

0.989

0.537

delta_otsA_trehalose

0.341

-0.13