Top 10 genes with highest correlation to Rv3479/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3478/PPE60 | (cc=0.5427) | info on Rv3478/PPE60 |
| Rv3136A/- | (cc=0.5164) | info on Rv3136A/- |
| Rv2623/TB31.7 | (cc=0.5071) | info on Rv2623/TB31.7 |
| Rv1803c/PE_PGRS32 | (cc=0.5045) | info on Rv1803c/PE_PGRS32 |
| Rv0107c/ctpI | (cc=0.4478) | info on Rv0107c/ctpI |
| Rv1965/yrbE3B | (cc=0.443) | info on Rv1965/yrbE3B |
| Rv3060c/- | (cc=0.44) | info on Rv3060c/- |
| Rv2955c/- | (cc=0.4372) | info on Rv2955c/- |
| Rv0368c/- | (cc=0.4283) | info on Rv0368c/- |
| Rv3367/PE_PGRS51 | (cc=0.4214) | info on Rv3367/PE_PGRS51 |
Correlation of Rv3479/- with Rv3136A/-
Normalized LFCs for Rv3479/-:
(description and provenance of datasets)
| Rv3479/- | Rv3136A/- | |
| Fe_supp_jason_reseq | -0.426 | 1.127 |
| low_pH_jason_reseq | -0.544 | -0.478 |
| NO_jason_reseq | 0.173 | 0.179 |
| B6_jason_reseq | 0.097 | 0.81 |
| MHCII_jason_reseq | 0.155 | 0.619 |
| Isoniazid02 | 0.955 | 2.03 |
| Rifampicin4 | -0.428 | 0.0 |
| Ethambutol3 | 1.175 | 2.81 |
| Meropenem3 | 1.544 | 2.511 |
| Vancomycin16 | -0.419 | -0.692 |
| Rv2680_day32 | 1.463 | 0.279 |
| H37Rv_KO_MarP | 0.374 | 1.388 |
| hypoxia_3wks | -1.372 | 0.231 |
| hypoxia_6wks | -0.591 | -0.898 |
| glycerol | 0.212 | -2.093 |
| cholesterol | -0.55 | -1.879 |
| AJ | 0.398 | -1.138 |
| Bibs02 | -0.658 | -0.8 |
| Bibs02c | -0.596 | -0.72 |
| BL6 | 0.051 | -1.346 |
| BL6a | -0.294 | -1.179 |
| BXD01 | -0.009 | -1.104 |
| BXD010 | -0.15 | -1.484 |
| BXD011 | -0.082 | -1.203 |
| BXD03 | -0.168 | -1.241 |
| BXD04 | 0.357 | -0.514 |
| BXD05 | 0.175 | -1.319 |
| BXD06 | -0.126 | -1.018 |
| BXD07 | -0.119 | -1.37 |
| BXD08 | -0.241 | -1.227 |
| BXD09 | 0.0 | -1.377 |
| CAST | 0.475 | -0.45 |
| CCcont | -0.118 | -1.683 |
| DS01 | -0.37 | -1.489 |
| DS02 | -0.046 | -0.975 |
| DS04 | -0.197 | -0.696 |
| DS0c | -0.091 | -1.326 |
| GP01 | -0.071 | -0.861 |
| GP02 | 0.045 | 0.397 |
| GP0c | -0.765 | -2.4 |
| NOD | 0.016 | -0.07 |
| NZO | 0.478 | -0.548 |
| PWK | 0.371 | -0.594 |
| H37Rv_KO_CtpC | -0.294 | -0.46 |
| H37Rv_KO_CtpD | 0.109 | -0.966 |
| H37Rv_KO_Rv1272 | -0.73 | -1.468 |
| H37Rv_KO_SugABC | 0.17 | -0.222 |
| H37Rv_KO_MbtN | 0.594 | -1.743 |
| Trans05 | -0.055 | -0.575 |
| macrophage_unactivated | -0.278 | -1.092 |
| IL1 | 0.062 | -1.071 |
| Rapamycin | -0.132 | -1.608 |
| Tcell | -0.593 | -0.678 |
| GMCSF | 0.219 | -0.782 |
| IFNab | -0.372 | -2.279 |
| IFNg | 0.056 | -1.208 |
| IFNg_GMCSF1 | -0.277 | -0.93 |
| Rv1432_day32 | 2.477 | 0.819 |
| Rv1565c_day32 | 0.603 | -0.333 |
| secA2_input | 0.33 | 0.161 |
| delta_Rv3594 | -0.106 | -0.344 |
| delta_Rv3717 | -0.064 | -1.354 |
| delta_Rv3811 | 0.073 | -0.413 |
| delta_Rv0954 | 0.318 | -0.16 |
| PonA1 | 0.701 | 0.132 |
| EccD1_KO | 0.918 | 0.151 |
| EspI_KO | 0.91 | -0.416 |
| PE35_KO | 1.114 | 0.925 |
| PPE68_KO | 0.675 | 0.771 |
| glycerol2 | 0.202 | 0.186 |
| lignocerate | 0.25 | -0.486 |
| oleate | -0.457 | 0.319 |
| phosphatidylcholine | -0.14 | -0.02 |
| acetate | -0.19 | 0.047 |
| glucAc | 0.096 | 0.104 |
| Rv0950ko | -0.621 | -0.422 |
| Rv1096ko | 0.434 | -0.648 |
| Rv3684ko | -0.524 | -1.215 |
| delta_otsA_trehalose | -0.083 | -0.196 |