Top 10 genes with highest correlation to Rv3479/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3478/PPE60 | (cc=0.5427) | info on Rv3478/PPE60 |
| Rv3136A/- | (cc=0.5164) | info on Rv3136A/- |
| Rv2623/TB31.7 | (cc=0.5071) | info on Rv2623/TB31.7 |
| Rv1803c/PE_PGRS32 | (cc=0.5045) | info on Rv1803c/PE_PGRS32 |
| Rv0107c/ctpI | (cc=0.4478) | info on Rv0107c/ctpI |
| Rv1965/yrbE3B | (cc=0.443) | info on Rv1965/yrbE3B |
| Rv3060c/- | (cc=0.44) | info on Rv3060c/- |
| Rv2955c/- | (cc=0.4372) | info on Rv2955c/- |
| Rv0368c/- | (cc=0.4283) | info on Rv0368c/- |
| Rv3367/PE_PGRS51 | (cc=0.4214) | info on Rv3367/PE_PGRS51 |
Correlation of Rv3479/- with Rv1965/yrbE3B
Normalized LFCs for Rv3479/-:
(description and provenance of datasets)
| Rv3479/- | Rv1965/yrbE3B | |
| Fe_supp_jason_reseq | -0.426 | -0.562 |
| low_pH_jason_reseq | -0.544 | -0.811 |
| NO_jason_reseq | 0.173 | 0.032 |
| B6_jason_reseq | 0.097 | -0.263 |
| MHCII_jason_reseq | 0.155 | 0.235 |
| Isoniazid02 | 0.955 | 2.097 |
| Rifampicin4 | -0.428 | -0.108 |
| Ethambutol3 | 1.175 | 1.24 |
| Meropenem3 | 1.544 | 2.064 |
| Vancomycin16 | -0.419 | 0.064 |
| Rv2680_day32 | 1.463 | -0.068 |
| H37Rv_KO_MarP | 0.374 | -0.452 |
| hypoxia_3wks | -1.372 | 0.223 |
| hypoxia_6wks | -0.591 | -0.712 |
| glycerol | 0.212 | -0.29 |
| cholesterol | -0.55 | -0.2 |
| AJ | 0.398 | -0.076 |
| Bibs02 | -0.658 | -0.834 |
| Bibs02c | -0.596 | 0.483 |
| BL6 | 0.051 | 0.81 |
| BL6a | -0.294 | 0.046 |
| BXD01 | -0.009 | -0.444 |
| BXD010 | -0.15 | -0.531 |
| BXD011 | -0.082 | -0.9 |
| BXD03 | -0.168 | -0.637 |
| BXD04 | 0.357 | -0.647 |
| BXD05 | 0.175 | -1.327 |
| BXD06 | -0.126 | -0.907 |
| BXD07 | -0.119 | -0.481 |
| BXD08 | -0.241 | -1.093 |
| BXD09 | 0.0 | -0.869 |
| CAST | 0.475 | -0.33 |
| CCcont | -0.118 | -0.816 |
| DS01 | -0.37 | -0.339 |
| DS02 | -0.046 | -0.383 |
| DS04 | -0.197 | -0.461 |
| DS0c | -0.091 | -0.429 |
| GP01 | -0.071 | -0.781 |
| GP02 | 0.045 | -1.295 |
| GP0c | -0.765 | 0.277 |
| NOD | 0.016 | -0.56 |
| NZO | 0.478 | -0.497 |
| PWK | 0.371 | -0.345 |
| H37Rv_KO_CtpC | -0.294 | -0.061 |
| H37Rv_KO_CtpD | 0.109 | 1.129 |
| H37Rv_KO_Rv1272 | -0.73 | 1.262 |
| H37Rv_KO_SugABC | 0.17 | -1.037 |
| H37Rv_KO_MbtN | 0.594 | -0.049 |
| Trans05 | -0.055 | 0.105 |
| macrophage_unactivated | -0.278 | -0.628 |
| IL1 | 0.062 | -0.383 |
| Rapamycin | -0.132 | -0.644 |
| Tcell | -0.593 | -0.805 |
| GMCSF | 0.219 | -1.133 |
| IFNab | -0.372 | -0.895 |
| IFNg | 0.056 | 0.0 |
| IFNg_GMCSF1 | -0.277 | -0.892 |
| Rv1432_day32 | 2.477 | 2.082 |
| Rv1565c_day32 | 0.603 | -0.177 |
| secA2_input | 0.33 | 0.556 |
| delta_Rv3594 | -0.106 | 0.0 |
| delta_Rv3717 | -0.064 | -0.297 |
| delta_Rv3811 | 0.073 | 0.054 |
| delta_Rv0954 | 0.318 | -0.239 |
| PonA1 | 0.701 | 0.121 |
| EccD1_KO | 0.918 | 1.352 |
| EspI_KO | 0.91 | 0.933 |
| PE35_KO | 1.114 | 0.545 |
| PPE68_KO | 0.675 | 0.506 |
| glycerol2 | 0.202 | 0.642 |
| lignocerate | 0.25 | 0.37 |
| oleate | -0.457 | 0.7 |
| phosphatidylcholine | -0.14 | 0.563 |
| acetate | -0.19 | 0.02 |
| glucAc | 0.096 | 0.124 |
| Rv0950ko | -0.621 | 1.224 |
| Rv1096ko | 0.434 | 1.158 |
| Rv3684ko | -0.524 | 0.18 |
| delta_otsA_trehalose | -0.083 | 0.603 |