Top 10 genes with highest correlation to Rv3477/PE31:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1995/- | (cc=0.4103) | info on Rv1995/- |
| Rv3179/- | (cc=0.4054) | info on Rv3179/- |
| Rv0045c/- | (cc=0.4024) | info on Rv0045c/- |
| Rv1153c/omt | (cc=0.4005) | info on Rv1153c/omt |
| Rv2684/arsA | (cc=0.3776) | info on Rv2684/arsA |
| Rv0551c/fadD8 | (cc=0.3685) | info on Rv0551c/fadD8 |
| Rv1467c/fadE15 | (cc=0.3634) | info on Rv1467c/fadE15 |
| Rv2642/- | (cc=0.3623) | info on Rv2642/- |
| Rv3067/- | (cc=0.3592) | info on Rv3067/- |
| Rv3839/- | (cc=0.3586) | info on Rv3839/- |
Correlation of Rv3477/PE31 with Rv3839/-
Normalized LFCs for Rv3477/PE31:
(description and provenance of datasets)
| Rv3477/PE31 | Rv3839/- | |
| Fe_supp_jason_reseq | -0.066 | 0.472 |
| low_pH_jason_reseq | -0.119 | 0.549 |
| NO_jason_reseq | 1.205 | -2.263 |
| B6_jason_reseq | 0.895 | 1.347 |
| MHCII_jason_reseq | 2.001 | 0.609 |
| Isoniazid02 | -0.425 | -0.3 |
| Rifampicin4 | -0.073 | -0.663 |
| Ethambutol3 | -0.395 | -0.111 |
| Meropenem3 | -0.6 | -0.047 |
| Vancomycin16 | -1.183 | -0.302 |
| Rv2680_day32 | 0.653 | 1.935 |
| H37Rv_KO_MarP | 0.888 | -0.087 |
| hypoxia_3wks | -1.822 | 0.845 |
| hypoxia_6wks | -0.94 | 0.731 |
| glycerol | -1.494 | 0.508 |
| cholesterol | -2.006 | -0.179 |
| AJ | 0.698 | 1.933 |
| Bibs02 | -1.28 | -0.517 |
| Bibs02c | -1.12 | 0.465 |
| BL6 | -0.9 | 0.526 |
| BL6a | -0.752 | 0.703 |
| BXD01 | -0.198 | 0.967 |
| BXD010 | -0.115 | 0.4 |
| BXD011 | 0.703 | 0.465 |
| BXD03 | 0.437 | 1.4 |
| BXD04 | -0.025 | 0.555 |
| BXD05 | 0.342 | 0.772 |
| BXD06 | -0.219 | 0.561 |
| BXD07 | -0.187 | 0.759 |
| BXD08 | 0.097 | 0.434 |
| BXD09 | 0.149 | 0.749 |
| CAST | 0.365 | 1.71 |
| CCcont | -0.588 | -0.415 |
| DS01 | -0.373 | 0.922 |
| DS02 | -1.202 | 0.914 |
| DS04 | -0.295 | 1.138 |
| DS0c | -0.542 | 0.943 |
| GP01 | -0.273 | 0.099 |
| GP02 | -1.451 | -0.391 |
| GP0c | 0.076 | -0.271 |
| NOD | 2.042 | 3.022 |
| NZO | 0.049 | 1.585 |
| PWK | 0.144 | 0.354 |
| H37Rv_KO_CtpC | -1.287 | 0.459 |
| H37Rv_KO_CtpD | 0.469 | 0.644 |
| H37Rv_KO_Rv1272 | 0.66 | 0.448 |
| H37Rv_KO_SugABC | -0.128 | 0.955 |
| H37Rv_KO_MbtN | -0.501 | 0.685 |
| Trans05 | -0.614 | 0.949 |
| macrophage_unactivated | -0.044 | 0.23 |
| IL1 | 0.308 | -0.697 |
| Rapamycin | -0.227 | -0.104 |
| Tcell | 0.381 | -0.274 |
| GMCSF | -1.434 | 0.359 |
| IFNab | -0.042 | 1.034 |
| IFNg | -0.299 | -0.649 |
| IFNg_GMCSF1 | 0.22 | 0.0 |
| Rv1432_day32 | 0.18 | 1.249 |
| Rv1565c_day32 | 0.447 | 2.35 |
| secA2_input | 0.775 | 1.371 |
| delta_Rv3594 | -0.994 | -0.109 |
| delta_Rv3717 | -1.318 | -0.179 |
| delta_Rv3811 | -0.199 | -0.086 |
| delta_Rv0954 | -0.109 | -0.063 |
| PonA1 | 0.711 | -0.082 |
| EccD1_KO | 0.418 | -0.227 |
| EspI_KO | 0.67 | -0.924 |
| PE35_KO | 0.601 | -0.945 |
| PPE68_KO | 0.035 | -1.081 |
| glycerol2 | -0.314 | -0.073 |
| lignocerate | -0.262 | -0.589 |
| oleate | 0.549 | 0.062 |
| phosphatidylcholine | 0.657 | -0.265 |
| acetate | -0.678 | -0.593 |
| glucAc | -1.292 | -0.528 |
| Rv0950ko | -0.365 | 1.677 |
| Rv1096ko | 0.422 | 1.101 |
| Rv3684ko | -0.285 | 1.808 |
| delta_otsA_trehalose | 2.57 | 6.0 |