Top 10 genes with highest correlation to Rv3477/PE31:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1995/- | (cc=0.4103) | info on Rv1995/- |
| Rv3179/- | (cc=0.4054) | info on Rv3179/- |
| Rv0045c/- | (cc=0.4024) | info on Rv0045c/- |
| Rv1153c/omt | (cc=0.4005) | info on Rv1153c/omt |
| Rv2684/arsA | (cc=0.3776) | info on Rv2684/arsA |
| Rv0551c/fadD8 | (cc=0.3685) | info on Rv0551c/fadD8 |
| Rv1467c/fadE15 | (cc=0.3634) | info on Rv1467c/fadE15 |
| Rv2642/- | (cc=0.3623) | info on Rv2642/- |
| Rv3067/- | (cc=0.3592) | info on Rv3067/- |
| Rv3839/- | (cc=0.3586) | info on Rv3839/- |
Correlation of Rv3477/PE31 with Rv3179/-
Normalized LFCs for Rv3477/PE31:
(description and provenance of datasets)
| Rv3477/PE31 | Rv3179/- | |
| Fe_supp_jason_reseq | -0.066 | -0.516 |
| low_pH_jason_reseq | -0.119 | -0.835 |
| NO_jason_reseq | 1.205 | 0.69 |
| B6_jason_reseq | 0.895 | 0.404 |
| MHCII_jason_reseq | 2.001 | 0.425 |
| Isoniazid02 | -0.425 | -0.455 |
| Rifampicin4 | -0.073 | 0.336 |
| Ethambutol3 | -0.395 | -0.188 |
| Meropenem3 | -0.6 | 0.053 |
| Vancomycin16 | -1.183 | 0.034 |
| Rv2680_day32 | 0.653 | 0.758 |
| H37Rv_KO_MarP | 0.888 | 0.398 |
| hypoxia_3wks | -1.822 | -0.144 |
| hypoxia_6wks | -0.94 | 0.263 |
| glycerol | -1.494 | -0.164 |
| cholesterol | -2.006 | 0.078 |
| AJ | 0.698 | -0.034 |
| Bibs02 | -1.28 | -0.241 |
| Bibs02c | -1.12 | -0.092 |
| BL6 | -0.9 | 0.299 |
| BL6a | -0.752 | -0.261 |
| BXD01 | -0.198 | 0.07 |
| BXD010 | -0.115 | -0.011 |
| BXD011 | 0.703 | -0.194 |
| BXD03 | 0.437 | -0.039 |
| BXD04 | -0.025 | 0.728 |
| BXD05 | 0.342 | -0.196 |
| BXD06 | -0.219 | -0.112 |
| BXD07 | -0.187 | -0.179 |
| BXD08 | 0.097 | 0.103 |
| BXD09 | 0.149 | -0.079 |
| CAST | 0.365 | -0.115 |
| CCcont | -0.588 | -0.237 |
| DS01 | -0.373 | 0.366 |
| DS02 | -1.202 | -0.09 |
| DS04 | -0.295 | -0.011 |
| DS0c | -0.542 | 0.086 |
| GP01 | -0.273 | -0.75 |
| GP02 | -1.451 | -0.343 |
| GP0c | 0.076 | -0.753 |
| NOD | 2.042 | 0.194 |
| NZO | 0.049 | -0.303 |
| PWK | 0.144 | 0.296 |
| H37Rv_KO_CtpC | -1.287 | -0.365 |
| H37Rv_KO_CtpD | 0.469 | 0.196 |
| H37Rv_KO_Rv1272 | 0.66 | 0.095 |
| H37Rv_KO_SugABC | -0.128 | -0.746 |
| H37Rv_KO_MbtN | -0.501 | -1.303 |
| Trans05 | -0.614 | -0.207 |
| macrophage_unactivated | -0.044 | 0.338 |
| IL1 | 0.308 | 0.255 |
| Rapamycin | -0.227 | -0.098 |
| Tcell | 0.381 | -0.238 |
| GMCSF | -1.434 | -0.639 |
| IFNab | -0.042 | 0.348 |
| IFNg | -0.299 | 0.069 |
| IFNg_GMCSF1 | 0.22 | 0.192 |
| Rv1432_day32 | 0.18 | 0.275 |
| Rv1565c_day32 | 0.447 | 0.51 |
| secA2_input | 0.775 | -0.2 |
| delta_Rv3594 | -0.994 | 0.251 |
| delta_Rv3717 | -1.318 | -0.347 |
| delta_Rv3811 | -0.199 | -0.211 |
| delta_Rv0954 | -0.109 | -0.287 |
| PonA1 | 0.711 | 0.087 |
| EccD1_KO | 0.418 | 0.447 |
| EspI_KO | 0.67 | 1.041 |
| PE35_KO | 0.601 | 0.397 |
| PPE68_KO | 0.035 | 0.675 |
| glycerol2 | -0.314 | 0.182 |
| lignocerate | -0.262 | 0.259 |
| oleate | 0.549 | 0.424 |
| phosphatidylcholine | 0.657 | 0.43 |
| acetate | -0.678 | -0.071 |
| glucAc | -1.292 | -0.153 |
| Rv0950ko | -0.365 | -0.286 |
| Rv1096ko | 0.422 | -0.033 |
| Rv3684ko | -0.285 | -0.19 |
| delta_otsA_trehalose | 2.57 | 0.408 |