Top 10 genes with highest correlation to Rv3477/PE31:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1995/- | (cc=0.4103) | info on Rv1995/- |
| Rv3179/- | (cc=0.4054) | info on Rv3179/- |
| Rv0045c/- | (cc=0.4024) | info on Rv0045c/- |
| Rv1153c/omt | (cc=0.4005) | info on Rv1153c/omt |
| Rv2684/arsA | (cc=0.3776) | info on Rv2684/arsA |
| Rv0551c/fadD8 | (cc=0.3685) | info on Rv0551c/fadD8 |
| Rv1467c/fadE15 | (cc=0.3634) | info on Rv1467c/fadE15 |
| Rv2642/- | (cc=0.3623) | info on Rv2642/- |
| Rv3067/- | (cc=0.3592) | info on Rv3067/- |
| Rv3839/- | (cc=0.3586) | info on Rv3839/- |
Correlation of Rv3477/PE31 with Rv2642/-
Normalized LFCs for Rv3477/PE31:
(description and provenance of datasets)
| Rv3477/PE31 | Rv2642/- | |
| Fe_supp_jason_reseq | -0.066 | 0.534 |
| low_pH_jason_reseq | -0.119 | -1.188 |
| NO_jason_reseq | 1.205 | 1.089 |
| B6_jason_reseq | 0.895 | -0.717 |
| MHCII_jason_reseq | 2.001 | 0.189 |
| Isoniazid02 | -0.425 | -0.607 |
| Rifampicin4 | -0.073 | -1.451 |
| Ethambutol3 | -0.395 | -0.18 |
| Meropenem3 | -0.6 | 0.401 |
| Vancomycin16 | -1.183 | -0.814 |
| Rv2680_day32 | 0.653 | -1.039 |
| H37Rv_KO_MarP | 0.888 | -0.498 |
| hypoxia_3wks | -1.822 | 1.368 |
| hypoxia_6wks | -0.94 | 0.211 |
| glycerol | -1.494 | 1.198 |
| cholesterol | -2.006 | 1.021 |
| AJ | 0.698 | -0.743 |
| Bibs02 | -1.28 | -0.026 |
| Bibs02c | -1.12 | -0.826 |
| BL6 | -0.9 | -3.323 |
| BL6a | -0.752 | -0.882 |
| BXD01 | -0.198 | -1.008 |
| BXD010 | -0.115 | -0.453 |
| BXD011 | 0.703 | -0.655 |
| BXD03 | 0.437 | -0.25 |
| BXD04 | -0.025 | -1.593 |
| BXD05 | 0.342 | -0.682 |
| BXD06 | -0.219 | -1.033 |
| BXD07 | -0.187 | -1.235 |
| BXD08 | 0.097 | -0.47 |
| BXD09 | 0.149 | -0.815 |
| CAST | 0.365 | 0.564 |
| CCcont | -0.588 | -2.885 |
| DS01 | -0.373 | 0.281 |
| DS02 | -1.202 | 0.35 |
| DS04 | -0.295 | 0.197 |
| DS0c | -0.542 | 0.368 |
| GP01 | -0.273 | -0.182 |
| GP02 | -1.451 | -1.424 |
| GP0c | 0.076 | 0.241 |
| NOD | 2.042 | 1.132 |
| NZO | 0.049 | -0.019 |
| PWK | 0.144 | -1.239 |
| H37Rv_KO_CtpC | -1.287 | -1.486 |
| H37Rv_KO_CtpD | 0.469 | 0.358 |
| H37Rv_KO_Rv1272 | 0.66 | 0.222 |
| H37Rv_KO_SugABC | -0.128 | 1.045 |
| H37Rv_KO_MbtN | -0.501 | -1.097 |
| Trans05 | -0.614 | 1.047 |
| macrophage_unactivated | -0.044 | -1.354 |
| IL1 | 0.308 | -0.062 |
| Rapamycin | -0.227 | -0.629 |
| Tcell | 0.381 | -0.323 |
| GMCSF | -1.434 | -1.745 |
| IFNab | -0.042 | 0.033 |
| IFNg | -0.299 | -1.384 |
| IFNg_GMCSF1 | 0.22 | 0.707 |
| Rv1432_day32 | 0.18 | 0.596 |
| Rv1565c_day32 | 0.447 | 1.041 |
| secA2_input | 0.775 | 1.077 |
| delta_Rv3594 | -0.994 | -0.626 |
| delta_Rv3717 | -1.318 | -0.617 |
| delta_Rv3811 | -0.199 | -0.344 |
| delta_Rv0954 | -0.109 | 0.023 |
| PonA1 | 0.711 | 1.382 |
| EccD1_KO | 0.418 | 0.145 |
| EspI_KO | 0.67 | 0.414 |
| PE35_KO | 0.601 | -0.114 |
| PPE68_KO | 0.035 | -0.515 |
| glycerol2 | -0.314 | 0.273 |
| lignocerate | -0.262 | -0.623 |
| oleate | 0.549 | 1.224 |
| phosphatidylcholine | 0.657 | 0.217 |
| acetate | -0.678 | -1.386 |
| glucAc | -1.292 | -4.616 |
| Rv0950ko | -0.365 | 0.365 |
| Rv1096ko | 0.422 | 1.339 |
| Rv3684ko | -0.285 | 0.216 |
| delta_otsA_trehalose | 2.57 | 2.703 |